View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4166_low_27 (Length: 253)
Name: NF4166_low_27
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4166_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 38198823 - 38199076
Alignment:
| Q |
1 |
actatgtgttgaacttcatttatagaaattatcttatctttcaatctgctcttacgaatagttgatatttaaaaagttaaacatacaacctttt-tatta |
99 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |
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| T |
38198823 |
actatgtgttgaacttcatttatagcaattatcttatctttcaatctgctcttacgaatagttgatatttaaaaagttaaatatacaactttttttatta |
38198922 |
T |
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| Q |
100 |
gtgttttgaatacgccgaatgaattgatgaaaaaccaaaacacaatctcttgtctcggatgcaaaataaaccaaacatcgccattatctttataataaaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38198923 |
gtgttttgaatacgccgaatgaattgatgaaaaaccaaaacacaatctcttgtctcggatgcaaaataaaccaaacatcgccattatctttataataaaa |
38199022 |
T |
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| Q |
200 |
taataataggattctaccataaaaaaccaacatgtgtattcttttaaacttcat |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38199023 |
taataataggattctaccataaaaaaccaacatgtgtattcttttaaacttcat |
38199076 |
T |
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