View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4166_low_30 (Length: 240)
Name: NF4166_low_30
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4166_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 13327448 - 13327236
Alignment:
| Q |
12 |
atgaagtttttgcctatatgattttataaatactagtggcaaatggttttaattctataattttataagtggtattcaaacaatggatagataataaaag |
111 |
Q |
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| T |
13327448 |
atgaagtttttgcctatatgattttataaatactagtggcaaatggttttaattctataattttataagtggtattcaaacaatggatagataataaaag |
13327349 |
T |
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| Q |
112 |
agtnnnnnnnttgaatgacactcaggaaaacttaacataggtgaactaggttttaaagtataatttagtaaagaaaaataaattttcaatatataacata |
211 |
Q |
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| T |
13327348 |
agtaaaaaaattgaatgacactcaggaaaacttaacataggtgaactaggttttaaagtatagtttagtaaagaaattttttttttcaatatataacata |
13327249 |
T |
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| Q |
212 |
tacaagaaataac |
224 |
Q |
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||||||||||||| |
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| T |
13327248 |
tacaagaaataac |
13327236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 36651136 - 36651204
Alignment:
| Q |
154 |
gaactaggttttaaagtataatttagtaaagaaaaataaattttc-aatatataacatatacaagaaat |
221 |
Q |
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| T |
36651136 |
gaaccaggttttaaagtataatttagtaaagaaaaataaattttcaaatgcataacatttacaagaaat |
36651204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 30632430 - 30632488
Alignment:
| Q |
159 |
aggttttaaagtataatttagtaaagaaaaataaattttc-aatatataacatatacaa |
216 |
Q |
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| T |
30632430 |
aggttttaaagtataatttaataaggaaaaataaattttcaaatgcataacatatacaa |
30632488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 36868810 - 36868756
Alignment:
| Q |
168 |
agtataatttagtaaagaaaaat-aaattttcaatatataacatatacaagaaat |
221 |
Q |
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||||||||||||||||||||||| ||||||| ||| | ||||||||| ||||||| |
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| T |
36868810 |
agtataatttagtaaagaaaaataaaattttaaatgtgtaacatatataagaaat |
36868756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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