View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4166_low_33 (Length: 237)
Name: NF4166_low_33
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4166_low_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38198577 - 38198354
Alignment:
| Q |
1 |
tgattcgtcatcacctgcaatagtgaacctaagttttaagttgataattactgaa-gttgataattctagcataaacgaagtatcctcgtaccttccata |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38198577 |
tgattcgtcatcacctgcaatagtgaacctaagttttaagttgataattacagaaagttgataattctagcataaacaaagtatcctcgtaccttccata |
38198478 |
T |
|
| Q |
100 |
gaccatcacttgcaaaaatgatgaattcagtgtcctcatcaattttcttgatcatcacgtctggttctgcagtgatgtgctccttcagttttccatctcc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38198477 |
gaccatcacttgcaaaaatgatgaattcagtgtcctcgtcaattttcttgatcatcacgtctggttctgcagtgatgtgctccttcagttttccatctcc |
38198378 |
T |
|
| Q |
200 |
aaatgctcttgtcattgctaactg |
223 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
38198377 |
aaatgctcttgtcattgctaactg |
38198354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University