View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4166_low_41 (Length: 221)

Name: NF4166_low_41
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4166_low_41
NF4166_low_41
[»] chr3 (15 HSPs)
chr3 (1-221)||(9108771-9108991)
chr3 (53-221)||(8746931-8747099)
chr3 (50-190)||(9019296-9019436)
chr3 (50-180)||(9101246-9101376)
chr3 (56-190)||(8755589-8755723)
chr3 (50-184)||(9029127-9029261)
chr3 (58-190)||(8965284-8965416)
chr3 (50-184)||(9034634-9034768)
chr3 (75-190)||(9015431-9015546)
chr3 (50-184)||(9023464-9023598)
chr3 (87-190)||(8962569-8962672)
chr3 (72-190)||(9112115-9112233)
chr3 (77-190)||(8957129-8957242)
chr3 (58-190)||(8988353-8988485)
chr3 (77-184)||(9026168-9026275)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 9108991 - 9108771
Alignment:
Q  1 catcacttaataatcatcactagcacagaataaaacaaaaataacgactatgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctcc 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9108991 catcaattaataatcatcactagcacagaataaaacaaaaataacgactatgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctcc 9108892  T
Q  101 gatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggactgaggtcttgagccgacaccagggag 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9108891 gatcatggccactgaacttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggactgaggtcttgagccgacaccagggag 9108792  T
Q  201 gcagcaaagataacgacgaaa 221  Q
    |||||||||||||||||||||    
T  9108791 gcagcaaagataacgacgaaa 9108771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 53 - 221
Target Start/End: Complemental strand, 8747099 - 8746931
Alignment:
Q  53 tttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacct 152  Q
    |||||||| ||| ||||  || ||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||  ||||||| ||||||||||||    
T  8747099 tttttagtgcttgaagatggcgagcattgacaacacaattgaaactccaatcatagccactgaatttgtaacagatccaacagctccaacatcaggacct 8747000  T
Q  153 gatgctggagccaatgagggactgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaa 221  Q
    | |||||||||||| ||||||||||||||||| || ||  |||||| ||| || ||||| | |||||||    
T  8746999 ggtgctggagccaacgagggactgaggtcttgggcagaggccagggtggcggcgaagatgaagacgaaa 8746931  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 50 - 190
Target Start/End: Complemental strand, 9019436 - 9019296
Alignment:
Q  50 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 149  Q
    ||||||| ||||||||||||  |||||||||||||| |||||||||||||||||||| || |||||| | |||||||||||   ||| || |||||||||    
T  9019436 atgttttcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactcgtaacagatccacaagccccaacatcagga 9019337  T
Q  150 cctgatgctggagccaatgagggactgaggtcttgagccga 190  Q
    |||| ||| |||||  |||||||||| ||||||||||||||    
T  9019336 cctggtgccggagcggatgagggactaaggtcttgagccga 9019296  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 50 - 180
Target Start/End: Complemental strand, 9101376 - 9101246
Alignment:
Q  50 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 149  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||||||| |||||||||| ||||||||| |||||||||| || ||||||||  |||||||     
T  9101376 atgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagaaccagcagctccagcatcaggg 9101277  T
Q  150 cctgatgctggagccaatgagggactgaggt 180  Q
    |||| |||||||||||| |||||||||||||    
T  9101276 cctggtgctggagccaacgagggactgaggt 9101246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 190
Target Start/End: Complemental strand, 8755723 - 8755589
Alignment:
Q  56 ttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgat 155  Q
    ||||||||| ||||  || ||||| ||||| | ||| |||||||| ||||| || |||||||||||||||||||| ||||| ||| |||||||| ||| |    
T  8755723 ttagttcttgaagatggcgagcatagacaaaataatcgaagctccaatcatagcaactgaatttgtaacagatccagcagcaccggcatcaggatctggt 8755624  T
Q  156 gctggagccaatgagggactgaggtcttgagccga 190  Q
    || |||||||| |||||||||||||||||||||||    
T  8755623 gccggagccaacgagggactgaggtcttgagccga 8755589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 9029261 - 9029127
Alignment:
Q  50 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 149  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||||||| |||||||||| ||| ||||| |||||| |||||| ||||||||  ||||||||    
T  9029261 atgtttttagtgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccgctgaacttgtaatagatccagcagctccagcatcagga 9029162  T
Q  150 cctgatgctggagccaatgagggactgaggtcttg 184  Q
    |||| |||||||||||| || ||||| ||||||||    
T  9029161 cctggtgctggagccaacgaaggactaaggtcttg 9029127  T

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Target: chr3; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 58 - 190
Target Start/End: Complemental strand, 8965416 - 8965284
Alignment:
Q  58 agttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgc 157  Q
    ||||||| |||| ||| ||||||||||  |||||||||||||||||||| ||||  ||| ||||||||||||||||||||||  | ||||||| || |||    
T  8965416 agttcttgaagattgcgagcattgacagcacaattgaagctccgatcattgccatagaacttgtaacagatccggcagctccagcgtcaggacttggtgc 8965317  T
Q  158 tggagccaatgagggactgaggtcttgagccga 190  Q
    ||||||||| || ||||| |||||||| |||||    
T  8965316 tggagccaacgacggactaaggtcttgggccga 8965284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 9034768 - 9034634
Alignment:
Q  50 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 149  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||||||| |||||||||| ||||| ||| ||| ||||||||| ||||||||  ||||||||    
T  9034768 atgtttttagtgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccaccgaacttgcaacagatccagcagctccagcatcagga 9034669  T
Q  150 cctgatgctggagccaatgagggactgaggtcttg 184  Q
    |||| ||| |||||||| || ||||| ||||||||    
T  9034668 cctggtgccggagccaacgaaggactaaggtcttg 9034634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 9015546 - 9015431
Alignment:
Q  75 agcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggac 174  Q
    ||||||||||| ||||||||| |||| | ||| | |||||||||||||||| |||| || |||||| |||||||||||| ||| |||| ||| ||||| |    
T  9015546 agcattgacaatacaattgaaactccaaccatagtcactgaatttgtaacatatccagctgctccggcatcaggacctggtgccggagacaacgaggggc 9015447  T
Q  175 tgaggtcttgagccga 190  Q
    ||||||||||||||||    
T  9015446 tgaggtcttgagccga 9015431  T

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Target: chr3; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 9023598 - 9023464
Alignment:
Q  50 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 149  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||  |||  ||||| ||| ||||||||| ||||||||||||| ||||||||  ||||||||    
T  9023598 atgtttttagtgcttgaagatggcgagcattgacaatacaaccgaaattccgaccatagccactgaacttgtaacagatccagcagctccagcatcagga 9023499  T
Q  150 cctgatgctggagccaatgagggactgaggtcttg 184  Q
    |||| ||| |||||||| |||||||| ||||||||    
T  9023498 cctggtgccggagccaacgagggactaaggtcttg 9023464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 8962672 - 8962569
Alignment:
Q  87 acaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggactgaggtcttgag 186  Q
    |||||||||||||||||||| ||||| |||  || ||||||||||||| ||||  |||||||||||| ||||||||| || |||||||| |||||||| |    
T  8962672 acaattgaagctccgatcatagccacagaacctgcaacagatccggcaactccagcatcaggacctggtgctggagctaacgagggactaaggtcttggg 8962573  T
Q  187 ccga 190  Q
    ||||    
T  8962572 ccga 8962569  T

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Target: chr3; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 190
Target Start/End: Complemental strand, 9112233 - 9112115
Alignment:
Q  72 gcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagg 171  Q
    |||||||||||||| |||||  ||||||| ||||| ||||||| |||||||| ||||||  ||||||||  ||||||  ||| ||| |||||||| ||||    
T  9112233 gcaagcattgacaacacaatcaaagctcccatcatagccactggatttgtaagagatccaacagctccggtatcaggtgctggtgccggagccaacgagg 9112134  T
Q  172 gactgaggtcttgagccga 190  Q
    ||||||||||||| |||||    
T  9112133 gactgaggtcttgggccga 9112115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 77 - 190
Target Start/End: Complemental strand, 8957242 - 8957129
Alignment:
Q  77 cattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggactg 176  Q
    ||||||||  |||||||||||||||||||| ||||| ||| |||||||| |||||||||||||  | |||||||| | ||||||||| || || |||||     
T  8957242 cattgacagcacaattgaagctccgatcatagccacagaacttgtaacaaatccggcagctccagcgtcaggaccgggtgctggagctaacgacggacta 8957143  T
Q  177 aggtcttgagccga 190  Q
    |||||||| |||||    
T  8957142 aggtcttgggccga 8957129  T

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Target: chr3; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 58 - 190
Target Start/End: Complemental strand, 8988485 - 8988353
Alignment:
Q  58 agttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgc 157  Q
    ||||||| ||||  || ||||||||||  || ||||||||||||||||| |||||  || ||||| |||| | ||||||||| || |||||||||| |||    
T  8988485 agttcttgaagatagcgagcattgacagtacgattgaagctccgatcatagccacataacttgtagcagaactggcagctccaacgtcaggacctggtgc 8988386  T
Q  158 tggagccaatgagggactgaggtcttgagccga 190  Q
    ||||| ||| |||||||| |||||||| |||||    
T  8988385 tggagacaacgagggactaaggtcttgggccga 8988353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 9026275 - 9026168
Alignment:
Q  77 cattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggactg 176  Q
    ||||||||| |||| |||| |||||||||| ||||||||| ||||||||||||| ||| ||||  |||||| ||||| |||||||||||| || |||||     
T  9026275 cattgacaatacaactgaaactccgatcattgccactgaacttgtaacagatccagcaactccagcatcagaacctggtgctggagccaacgaaggacta 9026176  T
Q  177 aggtcttg 184  Q
    || |||||    
T  9026175 agatcttg 9026168  T

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