View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4166_low_44 (Length: 208)
Name: NF4166_low_44
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4166_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-103; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 5591921 - 5592124
Alignment:
| Q |
1 |
ctgtgaagtgaaatccaattccatctg--tttcttgttcaacaaggtgcttaatatccattggataagcaaaccctgaatgattagatgaatcgtaagat |
98 |
Q |
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| T |
5591921 |
ctgtgaagtgaaatccaattccatctcaatttcttgttcaacaaggtgcttaatatccattggataagcaaaccctgaatgattagatgaatcgtaagat |
5592020 |
T |
|
| Q |
99 |
gttgttgcaatgagtaggttccaagcctcgccgggatggactgcatcccaaaacacatactccctcctattagagcatggcctttcatcacgaatacaca |
198 |
Q |
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| T |
5592021 |
gttgttgcaatgagtaggttccaagcctcgccgggatggactgcatcccaaaacacatactccctcctattagagcatggcctttcatcacgaatacaca |
5592120 |
T |
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| Q |
199 |
atcc |
202 |
Q |
| |
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|||| |
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| T |
5592121 |
atcc |
5592124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 5579929 - 5580128
Alignment:
| Q |
1 |
ctgtgaagtgaaatccaattccatctg--tttcttgttcaacaaggtgcttaatatccattggataagcaaaccctgaatgattagatgaatcgtaagat |
98 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||| |||||||||| | ||||||||||||| | |
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| T |
5579929 |
ctgtgaagtgaaatccaattccatctcaatttcttgtgcaacaaggtgtttaatatccattggataagtgaaccctgaattagtagatgaatcgtacatt |
5580028 |
T |
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| Q |
99 |
gttgttgcaatgagtaggttccaagcctcgccgggatggactgcatcccaaaacacatactccctcctattagagcatggcctttcatcacgaatacaca |
198 |
Q |
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| T |
5580029 |
cttgttgcaatgagtaggctccaagcctcagtgggatgaactgcatcccaagacacatattcactcctattatagcatggcctttcatcacgaatgcaca |
5580128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 5572277 - 5572451
Alignment:
| Q |
28 |
tttcttgttcaacaaggtgcttaatatccattggataagcaaaccctgaatgattagatgaatcgtaagatgttgttgcaatgagtaggttccaagcctc |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||| || | ||||||||| |||||||| ||||||||| |
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| T |
5572277 |
tttcttgttcaacaaggtgcttaatatccattggataagtgaaccctggattattagatgaatcatacattcttgttgcaaagagtaggtaccaagcctc |
5572376 |
T |
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| Q |
128 |
gccgggatggactgcatcccaaaacacatactccctcctattagagcatggcctttcatcacgaatacacaatcc |
202 |
Q |
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| T |
5572377 |
ggtgggatggacttcatcccaaaacacatagtcactcctattatagcatggcctttcatcaggaatacacaatcc |
5572451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 5575196 - 5575391
Alignment:
| Q |
1 |
ctgtgaagtgaaatccaattccatctg--tttcttgttcaacaaggtgcttaatatccattggataagcaaaccctgaatgattagatgaatcgtaagat |
98 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||| |||||||| |||| ||||| ||||| |
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| T |
5575196 |
ctgtgaagtgaaatccaattccatttcaatttcttgttcaacaaggttcttaatatccattggataagtgaaccctga---attatgtgaattataagac |
5575292 |
T |
|
| Q |
99 |
gttgttgcaatgagtaggttccaagcctcgccgggatggactgcatcccaaaacacatactccctcctattagagcatggcctttcatcacgaatacac |
197 |
Q |
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|| ||||| |||| |||| | ||||| |||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||| |||||||| |
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| T |
5575293 |
cttattgcatagagttggttgcttgcctcagtgggatggacttcatcccaaaacgcatactcactcctattatagcatggcctttcatcaggaatacac |
5575391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 27 - 197
Target Start/End: Original strand, 5585723 - 5585893
Alignment:
| Q |
27 |
gtttcttgttcaacaaggtgcttaatatccattggataagcaaaccctgaatgattagatgaatcgtaagatgttgttgcaatgagtaggttccaagcct |
126 |
Q |
| |
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|||||||||||| |||||| |||||||||||||||||||| || || ||| |||| ||||||| || | |||||||| ||| |||||||||||||| |
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| T |
5585723 |
gtttcttgttcagcaaggttcttaatatccattggataagtgaagactaaattattatatgaatcatacattcttgttgcagtgactaggttccaagcct |
5585822 |
T |
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| Q |
127 |
cgccgggatggactgcatcccaaaacacatactccctcctattagagcatggcctttcatcacgaatacac |
197 |
Q |
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| T |
5585823 |
cagtggtatggaattcatcccaaaacacatactctcccctattatagcatggcctttcatcaggaatacac |
5585893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 5581683 - 5581857
Alignment:
| Q |
14 |
tccaattccatct--gtttcttgttcaacaaggtgcttaatatccattggataagcaaaccctgaatgattagatgaatcgtaagatgttgttgcaatga |
111 |
Q |
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||||||||||||| |||| |||||||||||||| ||||||||||||||||| | || ||||||| || || || ||||| |||||||| ||| |
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| T |
5581683 |
tccaattccatcttagttttttgttcaacaaggtttttaatatccattggatatgtgaatcctgaattatatgaatcataataagaccttgttgcagtga |
5581782 |
T |
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| Q |
112 |
gtaggttccaagcctcgccgggatggactgcatcccaaaacacatactccctcctattagagcatggcctttcat |
186 |
Q |
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|| |||| | ||||| |||||||||| |||||||||| | ||| || ||||||||| ||||||||||||||| |
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| T |
5581783 |
gttggttatatgcctcagtgggatggacttcatcccaaaaaaaataatcactcctattatagcatggcctttcat |
5581857 |
T |
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