View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4166_low_8 (Length: 523)

Name: NF4166_low_8
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4166_low_8
NF4166_low_8
[»] chr1 (1 HSPs)
chr1 (1-268)||(42157759-42158026)
[»] chr3 (3 HSPs)
chr3 (269-506)||(10305376-10305613)
chr3 (269-505)||(51005198-51005434)
chr3 (261-506)||(4251232-4251478)
[»] chr5 (1 HSPs)
chr5 (267-506)||(4246071-4246310)
[»] chr2 (1 HSPs)
chr2 (269-506)||(13761448-13761685)
[»] scaffold0024 (1 HSPs)
scaffold0024 (265-506)||(142977-143220)
[»] chr4 (2 HSPs)
chr4 (409-498)||(1814123-1814212)
chr4 (267-367)||(1814022-1814122)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 42158026 - 42157759
Alignment:
Q  1 aacttctagctgaataaccaaatctacaacatgtcctaaattctaacggttctgttcaaaaacaaaactctgctgctacaagatatatatcaatttgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42158026 aacttctagctgaataaccaaatctacaacatgtcctaaattctaacggttctgttcaaaaacgaaactctgctgctacaagatatatatcaatttgaaa 42157927  T
Q  101 gtaaagatggataaaatttaaattaatgttttttagatacagagtttgactatctatggaatattgtattaacgttctatggtaggactaataatagaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42157926 gtaaagatggataaaatttaaattaatgttttttagatacagagtttgactatctatggaatattgtattaacgttctatggtaggactaataatagaga 42157827  T
Q  201 tgattgggatgatagtcaaatacaccggtttgcattttgtaacataaaattcataactatataataaa 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42157826 tgattgggatgatagtcaaatacaccggtttgcattttgtaacataaaattcataactatatgataaa 42157759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 269 - 506
Target Start/End: Complemental strand, 10305613 - 10305376
Alignment:
Q  269 ggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgataccatt 368  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10305613 ggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgataccatt 10305514  T
Q  369 tatctctccccttgtttcctgctgttccactcaatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttagagacgtga 468  Q
    ||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10305513 tatctctccccttgtttcaaactgttccactccatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttagagacgtga 10305414  T
Q  469 caaagttgcctttgcttattgtctttttctgaacatac 506  Q
    |||||||||||||||||||||||||||||||| |||||    
T  10305413 caaagttgcctttgcttattgtctttttctgagcatac 10305376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 269 - 505
Target Start/End: Complemental strand, 51005434 - 51005198
Alignment:
Q  269 ggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgataccatt 368  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  51005434 ggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatttccttgttttatctctttttggtcataccatt 51005335  T
Q  369 tatctctccccttgtttcctgctgttccactcaatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttagagacgtga 468  Q
    ||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51005334 tatctctccccttgttttctgctgttccacttcatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttagagacgtga 51005235  T
Q  469 caaagttgcctttgcttattgtctttttctgaacata 505  Q
    |||||||||||||||||||||||||||||||| ||||    
T  51005234 caaagttgcctttgcttattgtctttttctgagcata 51005198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 261 - 506
Target Start/End: Original strand, 4251232 - 4251478
Alignment:
Q  261 ataataaaggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgtttt-atctctttttggt 359  Q
    |||| |||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  4251232 ataaaaaaggaaaatgcttaacatcgcaacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatttccttgtttttatctctttttggt 4251331  T
Q  360 gataccatttatctctccccttgtttcctgctgttccactcaatctccagattctcttcattgtattattttattggttctcttcaattaccaaagttta 459  Q
     ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4251332 cataccatttatctctccccttgtttcctgttgttccactccatctccagattctcttcattgtattattttataggttctcttcaattaccaaagttta 4251431  T
Q  460 gagacgtgacaaagttgcctttgcttattgtctttttctgaacatac 506  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  4251432 gagacgtgacaaagttgcctttgcttattgtctttttctgagcatac 4251478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 267 - 506
Target Start/End: Original strand, 4246071 - 4246310
Alignment:
Q  267 aaggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgatacca 366  Q
    |||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  4246071 aaggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacatgagaaaagctcaaaagcggtgatttctttgttttatctctttttggtcatacca 4246170  T
Q  367 tttatctctccccttgtttcctgctgttccactcaatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttagagacgt 466  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4246171 tttatctctccccttgtttcctgctgttccacttcatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttagagacgt 4246270  T
Q  467 gacaaagttgcctttgcttattgtctttttctgaacatac 506  Q
    || ||||||| ||||||||||||||||||||||| |||||    
T  4246271 gagaaagttgtctttgcttattgtctttttctgagcatac 4246310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 269 - 506
Target Start/End: Complemental strand, 13761685 - 13761448
Alignment:
Q  269 ggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgataccatt 368  Q
    ||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  13761685 ggaaaatgcttaacatcacgacaaaagtttcacaaatatcacacgagaaaagctcaaaagtggtgatttccttgttttatctctttttggtcataccatt 13761586  T
Q  369 tatctctccccttgtttcctgctgttccactcaatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttagagacgtga 468  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13761585 tatctctccccttgtttcctgctgttccacttcatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttaaagacgtga 13761486  T
Q  469 caaagttgcctttgcttattgtctttttctgaacatac 506  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  13761485 caaaattgcctttgcttattgtctttttctgagcatac 13761448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 265 - 506
Target Start/End: Complemental strand, 143220 - 142977
Alignment:
Q  265 taaaggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgatac 364  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |  ||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  143220 taaaggaaaatgcttaacatcgcgacaaaagtttcacgaatatcatatgagaaaagttcaaaagcggtgatttccttgttttatctctttttggtcatac 143121  T
Q  365 catttatctctccccttgtttcctgctgttccactcaatctccagattctcttcattgtattattttattg--gttctcttcaattaccaaagtttagag 462  Q
    ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  143120 catttatctcttcccttgtttccagctgttccactccatctccagattctcttcattgtattattttattggtgttctcttcaattaccaaagtttagag 143021  T
Q  463 acgtgacaaagttgcctttgcttattgtctttttctgaacatac 506  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  143020 acgtgacaaagttgcctttgcttattgtctttttctgagcatac 142977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 409 - 498
Target Start/End: Original strand, 1814123 - 1814212
Alignment:
Q  409 gattctcttcattgtattattttattggttctcttcaattaccaaagtttagagacgtgacaaagttgcctttgcttattgtctttttct 498  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1814123 gattctctttattgtattattttattggttctctttaattaccaaagtttagagacgtgacaaagttgcatttgcttattgtctttttct 1814212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 267 - 367
Target Start/End: Original strand, 1814022 - 1814122
Alignment:
Q  267 aaggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgatacca 366  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | |||| |||||||||||||||||||| |||||||||| ||||||    
T  1814022 aaggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacacgagaaaagtttaaaaacggtgatttccttgttttatttctttttggtcatacca 1814121  T
Q  367 t 367  Q
    |    
T  1814122 t 1814122  T

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