View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4166_low_9 (Length: 513)
Name: NF4166_low_9
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4166_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 3789412 - 3788921
Alignment:
| Q |
1 |
gacttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaaccatccagccattgcttgcttcataagtcactgtggatgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3789412 |
gacttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaaccatccagccattgcttgcttcataagtcactgtggatgga |
3789313 |
T |
|
| Q |
101 |
attccaccattgaaggtgtacatgccggtgtacctttcttgtgttggccatttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3789312 |
attccaccattgaaggtgtacatgccggtgtacctttcttgtgttggccatttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtggaa |
3789213 |
T |
|
| Q |
201 |
gactggacttgaattagagaaagatgatgatggatttatatcaaggcaagagataaataagaaggtggatcaagtagttggtgatgatgatataaaggca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
3789212 |
gactggacttgaattagagaaagatgatgatggatttatatcaaggcaagagataaagaagaaggtggatcaagtagttggtgatgatgacataaaggaa |
3789113 |
T |
|
| Q |
301 |
atgtgtttgaaaatgaagaaaatgactattaagaatatagaagaaggtggccagtcatcacataatctccaaaagtttattacttgggcgaattattaat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
3789112 |
atgtgtttgaaaatgaagaaaatgactattactaatatagaagaaggtggccagtcatcacataatcttcaaaagtttattagttgggcgaattattaat |
3789013 |
T |
|
| Q |
401 |
gtttttataatctattatttcttgttgttttgaattagtggtgttaaatattcatgtatgatgaaggaaaaacaattagtggtgtctctttt |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3789012 |
gtttttataatctattatttcttgttgttttgaattagtggtgttaaatattcatgtatgatgaaggaaaaacaattagtggtgtctctttt |
3788921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 3800695 - 3801136
Alignment:
| Q |
1 |
gacttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaaccatccagccattgcttgcttcataagtcactgtggatgga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
3800695 |
gacttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttataagtcattgtggatgga |
3800794 |
T |
|
| Q |
101 |
attccaccattgaaggtgtacatgccggtgtacctttcttgtgttggccatttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtggaa |
200 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3800795 |
attctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttctcaataaatcgtatatttgtgatgtgtggaa |
3800894 |
T |
|
| Q |
201 |
gactggacttgaattagagaaagatgatgatggatttatatcaaggcaagagataaataagaaggtggatcaagtagttggtgatgatgatataaaggca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| ||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
3800895 |
gactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaagaaggtgtatcaagtagttggtgatgatgacataaaggca |
3800994 |
T |
|
| Q |
301 |
atgtgtttgaaaatgaagaaaatgactattaagaatatagaagaaggtggccagtcatcacataatctccaaaagtttattacttgggcgaattattaat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3800995 |
atgtgtttgaaaatgaagaaaatgactattactaatatagaagaaggtggccagtcatcacataatctccaaaagtttattacttgggcgaattattaat |
3801094 |
T |
|
| Q |
401 |
gtttttataatctattatttcttgttgttttgaattagtggtgtt |
445 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
3801095 |
gtgtttataatctatta---cttgttgttttgaattagtgttgtt |
3801136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 3780346 - 3780122
Alignment:
| Q |
9 |
tggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaaccatccagccattgcttgcttcataagtcactgtggatggaattccacc |
108 |
Q |
| |
|
||||| |||||| || |||||||| ||||| || |||| || ||||||||||| || || |||||||| ||||| ||||| || ||||||||||| ||| |
|
|
| T |
3780346 |
tggaactaaaggaaagattgttggatgggcgccgcaaaagaagatattgaaccaccctgctattgcttgtttcattagtcattgcggatggaattctacc |
3780247 |
T |
|
| Q |
109 |
attgaaggtgtacatgccggtgtacctttcttgtgttggccatttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtggaagactggac |
208 |
Q |
| |
|
| ||||||||| || |||||||||||||||||||||||| ||| |||||||||| | || || || ||| ||||||||||||||||| ||||| |
|
|
| T |
3780246 |
gtagaaggtgtatatagcggtgtacctttcttgtgttggccgtttcacggtgatcaatttatgaacaagtcatatgtttgtgatgtgtggaaggttggac |
3780147 |
T |
|
| Q |
209 |
ttgaattagagaaagatgatgatgg |
233 |
Q |
| |
|
||||| |||| || ||||| ||||| |
|
|
| T |
3780146 |
ttgaactagacaaggatgaagatgg |
3780122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 52 - 227
Target Start/End: Complemental strand, 3768025 - 3767850
Alignment:
| Q |
52 |
atattgaaccatccagccattgcttgcttcataagtcactgtggatggaattccaccattgaaggtgtacatgccggtgtacctttcttgtgttggccat |
151 |
Q |
| |
|
|||||||||||||| || || ||||| ||||| ||||| ||||| |||||||| || || ||||||||| || | ||| |||||||||| |||||||||| |
|
|
| T |
3768025 |
atattgaaccatcctgctatagcttgtttcattagtcattgtggttggaattctactatagaaggtgtatattctggtatacctttcttatgttggccat |
3767926 |
T |
|
| Q |
152 |
ttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatga |
227 |
Q |
| |
|
|| ||||||||||||| || || || ||||||||||||||||||||| |||| |||||||||| || ||||| |
|
|
| T |
3767925 |
ttgcaactgatcaatttacgaacaagtcatatatttgtgatgtgtggaaggttggatttgaattagacaaggatga |
3767850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 270
Target Start/End: Complemental strand, 3755299 - 3755159
Alignment:
| Q |
130 |
gtacctttcttgtgttggccatttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatg |
229 |
Q |
| |
|
|||||||| ||||||| ||||||||| | ||||||| || | || || | |||||||||||||| |||||| |||| | | ||| || || ||||| |
|
|
| T |
3755299 |
gtacctttgttgtgtttgccattttttagtgatcaacttatgaacaagacatatatttgtgatgtttggaaggttggattgggatttgaaaaggatgaaa |
3755200 |
T |
|
| Q |
230 |
atggatttatatcaaggcaagagataaataagaaggtggat |
270 |
Q |
| |
|
||||||| ||| ||| | ||||||||| |||||||||||| |
|
|
| T |
3755199 |
atggattaataacaaagggagagataaagaagaaggtggat |
3755159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University