View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4167_high_1 (Length: 1137)
Name: NF4167_high_1
Description: NF4167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4167_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 665; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 288 - 1128
Target Start/End: Original strand, 44005463 - 44006310
Alignment:
| Q |
288 |
tacctcttatttatagtggctagtgaggaaagtggattgcattgtatataatatagaaaagtagaaaacaaaattaattacagttaaattggataggaaa |
387 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44005463 |
tacctcttatttatagtggctagtgaggaaagtggattgcattgtatataatatagaaaagtagaaagcaaaattaattacagttaaattggataggaaa |
44005562 |
T |
|
| Q |
388 |
gagagaaaaggaaagatatttcagagatttgtttggataagggaaatgctcattgatcatttggtagatggtgacactggtaatgtaatgccatgatgaa |
487 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44005563 |
gagagaaaaggaaagatctttcagagatttgtttggataagggaaatgctcattgatcatttggtagatggtgacactggtaatgtaatgccatgatgaa |
44005662 |
T |
|
| Q |
488 |
caagttggattcagcaacaatcaaggaatgctggaaatggaataagaacatattttattagccgnnnnnnnnnctctttcggtcccattttcagcatcat |
587 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44005663 |
caagttggattcagcaacaatcaaggaatgctggaaatggaataagaacatattttattagcc-aaaaaaaaactctttcggtcccattttcagcatcat |
44005761 |
T |
|
| Q |
588 |
gaacattattata------------gtaatgtgaatatatgaaaacttctcttaggcagatggaacaaaaccaacgctgtgtttggacaaaatctatcaa |
675 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44005762 |
gaacattattatatacattattatagtaatgtgaatatatgaaaacttctcttaggcagatggaacaaaaccaacgctgtgtttggacaaaatctatcaa |
44005861 |
T |
|
| Q |
676 |
aagaatgtaatccttataattaaattagtattatgcaaagtctagaggccagaagaggnnnnnnnggaattcctagtgtcatctgcatggctatgttctt |
775 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44005862 |
aagaatgtaatccttataattaaattagtattatgcaaagtctagaggccagaagaggaaaaaaaggaattcctagtgtcatctgcatggctatgttctt |
44005961 |
T |
|
| Q |
776 |
acatatccattgtctttacttttgttggtattgatctataacgggagaataaaaagtaacatgattatgcaaataattcagatttattttgtttaagcaa |
875 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44005962 |
acatatccattgtctttacttttgttgatattgatctataacgggagaataaaaagtaacatgattatgcaaataattcagatttattttgtttaagcaa |
44006061 |
T |
|
| Q |
876 |
ctgccatgtctatagtaattattactgtgttagctcagctgctgctgttatttttcttgttgtttctctcttttgtattcccttttgcgtgctcttgctc |
975 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006062 |
ctgccatgtctatagtaattattactgtgttagctcagctgctgctgttatttttc---ttgtttctctcttttgtattcccttttgcgtgctcttgctc |
44006158 |
T |
|
| Q |
976 |
atcttgtgctcaaagcttcctgtgattaataaattttgctaattcnnnnnnnnnnnnntgtctatagtaatcggatgtttttctttgnnnnnnnctacaa |
1075 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
44006159 |
atcttgtgctcaaagcttcctgtgattaataaattttgctaattc-aaaaaaaaaatatgtctatagtaatcggatgtttttctttgaaaaaaactacaa |
44006257 |
T |
|
| Q |
1076 |
ccaaatgttattatgaaagtgatcaattgtcctgtctaaagtaacatgatgat |
1128 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006258 |
ccaaatgttattatgaaagtgatcaattgtcctgtctaaagtaacatgatgat |
44006310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-115
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 44005195 - 44005410
Alignment:
| Q |
19 |
aaagcccattccatttctctaccatatgtatcattgtctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44005195 |
aaagcccattccatttctctaccatatgtatcattttctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacaca |
44005294 |
T |
|
| Q |
119 |
tgtaacatgaactctttgtaaatataactgcagctttctttgatgccaaatcctttactctatccattactaattcaaagtaaataataatatgaagctt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44005295 |
tgtaacatgaactctttgtaaatataactgcagctttctttgatgccaaatcctttactctatccattactaattcaaagtaaataataatatgaagctt |
44005394 |
T |
|
| Q |
219 |
gaaaatattcaaagta |
234 |
Q |
| |
|
|||||||||||||||| |
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| T |
44005395 |
gaaaatattcaaagta |
44005410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 44009121 - 44009331
Alignment:
| Q |
19 |
aaagcccattccatttctctaccatatgtatcattgtctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44009121 |
aaagcccattccatttctctaccatatgtatcattgtctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacaca |
44009220 |
T |
|
| Q |
119 |
tgtaacatgaactctttgtaaatataactgcagctttctttgatgccaaatcctttactctatccattactaattcaaagtaaataataatatgaagctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| |||||||| ||| |
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| T |
44009221 |
tgtaacatgaactctttgtaaatataactgcagctttctttgatgccaaatcctttactctatccattacta----aatatatataaaaatatgaatctt |
44009316 |
T |
|
| Q |
219 |
gaaaatattcaaagt |
233 |
Q |
| |
|
||||||||||||||| |
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| T |
44009317 |
gaaaatattcaaagt |
44009331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 288 - 503
Target Start/End: Original strand, 44009386 - 44009605
Alignment:
| Q |
288 |
tacctcttatttatagtggctagtgaggaaagtggattgcattgtatataatatagaaaagtagaaaacaaaattaattacagttaaattggataggaaa |
387 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||| | |||| ||||||||||||| |||||| || |||||| ||||||||||||||||||| |
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|
| T |
44009386 |
tacctcttatttatagtggtttgtgaggaaagtggattgcaatatataatatatagaaaagtataaaacagaaataattatagttaaattggataggaaa |
44009485 |
T |
|
| Q |
388 |
g--agagaaaagg-----aaagatatttcagagatttgtttggataagggaaatgctcattgatcatttggtagatggtgacactggtaatgtaatgcca |
480 |
Q |
| |
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| |||||||||| |||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
44009486 |
gaaagagaaaaggaatttaaagttctttcacatatttgtttggataagggaaatgctcattgatcatttggtagatggtgacactcgtaatgtattgcc- |
44009584 |
T |
|
| Q |
481 |
tgatgaacaagttggattcagca |
503 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
44009585 |
--ctgaacaagttggatttagca |
44009605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 596 - 688
Target Start/End: Original strand, 44009759 - 44009852
Alignment:
| Q |
596 |
ttatagtaatgtgaatatatgaaaacttctcttaggcagatggaacaaaaccaacgctgtgtt-tggacaaaatctatcaaaagaatgtaatcc |
688 |
Q |
| |
|
|||||||||| | ||||||| || |||||| |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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|
| T |
44009759 |
ttatagtaatattaatatatacaatcttctcataggtagatggaacaaaaccaatgctgtgttgtggacaaaatctatcaaaagaatgtaatcc |
44009852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 39846795 - 39846625
Alignment:
| Q |
19 |
aaagcccattccatttctctaccatatgtatcattgtctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacaca |
118 |
Q |
| |
|
||||||| ||||||||| |||||||| | |||||||| || |||| || |||||||||||||| || |||||||| | |||| | ||||| ||||||| |
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|
| T |
39846795 |
aaagccctttccatttccctaccatagggttcattgtcaagctcatgcacagcaggacttgctcctagctcatagaacaattgtgttatgctgtgacaca |
39846696 |
T |
|
| Q |
119 |
tgtaacatgaactctttgtaaatataactgcagctttctttgatgccaaatcctttactctatccattact |
189 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
39846695 |
tgtagcatgaactctttgtgaatataactgcagctttctttgatgccaaatccttcactctatccattact |
39846625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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