View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4167_high_10 (Length: 353)
Name: NF4167_high_10
Description: NF4167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4167_high_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 29 - 353
Target Start/End: Original strand, 6235772 - 6236093
Alignment:
| Q |
29 |
gtgacattatctttgattgtgaaacgaccgatagctttgccatacaattattccagctttgtgtcaccgcatagaacagatatgaaatatcctacttctt |
128 |
Q |
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| T |
6235772 |
gtgacattatctttgattgtgaaacgaccgatagctttgccgtacaattattccagctttgtgtcaccgcatagaacagatatgaaatatcctacttctt |
6235871 |
T |
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| Q |
129 |
ggtcaagccagccaatctttatcttttcccatctgtttcaataacaaaataacttgttcatagactattttgtgaagaaaatgttatattctaactctaa |
228 |
Q |
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| T |
6235872 |
ggtcaagccagccaatctttatcttttcccatctgtttcaataacaaaataacttgttca-ggactattttgtgaagaaaatgttatattctaactctaa |
6235970 |
T |
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| Q |
229 |
tatgaatgcagagcatagtcattacttagccccatagctatagtgcaaaacaataataatagagtaacaatatttatacatctcaatttttaattttcaa |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6235971 |
tatgaatgcagagcatagtcattacttagccccatagc--tagtgcaaaccaataataatagagtaacaatatttatacatctcaatttttaattttcaa |
6236068 |
T |
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| Q |
329 |
ctcattgaacaattcatcatcatca |
353 |
Q |
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||||||||||||||||||||||||| |
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| T |
6236069 |
ctcattgaacaattcatcatcatca |
6236093 |
T |
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