View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4167_high_14 (Length: 304)

Name: NF4167_high_14
Description: NF4167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4167_high_14
NF4167_high_14
[»] chr5 (7 HSPs)
chr5 (2-154)||(12917989-12918139)
chr5 (74-154)||(21683319-21683399)
chr5 (2-154)||(3412313-3412463)
chr5 (70-154)||(3664695-3664779)
chr5 (74-154)||(29413615-29413694)
chr5 (95-154)||(5877434-5877492)
chr5 (95-154)||(22315044-22315102)
[»] chr3 (3 HSPs)
chr3 (2-156)||(4643454-4643606)
chr3 (72-121)||(25693172-25693221)
chr3 (95-154)||(32747585-32747643)
[»] chr1 (8 HSPs)
chr1 (2-152)||(5356705-5356854)
chr1 (75-154)||(13432961-13433040)
chr1 (8-154)||(45619109-45619253)
chr1 (95-154)||(11912118-11912176)
chr1 (95-155)||(26622677-26622736)
chr1 (95-155)||(32798930-32798989)
chr1 (95-154)||(23761310-23761368)
chr1 (103-154)||(41304477-41304528)
[»] scaffold0068 (1 HSPs)
scaffold0068 (74-154)||(30511-30591)
[»] chr4 (8 HSPs)
chr4 (174-253)||(4841019-4841098)
chr4 (174-253)||(5161483-5161562)
chr4 (174-253)||(5183766-5183845)
chr4 (174-241)||(5215310-5215377)
chr4 (174-253)||(4855525-4855604)
chr4 (182-253)||(5174432-5174503)
chr4 (182-253)||(5197173-5197244)
chr4 (83-154)||(30210523-30210593)
[»] chr2 (8 HSPs)
chr2 (68-155)||(17864697-17864784)
chr2 (74-154)||(36842963-36843042)
chr2 (75-154)||(37438453-37438532)
chr2 (95-154)||(16816285-16816343)
chr2 (95-154)||(16855442-16855500)
chr2 (95-154)||(21066874-21066932)
chr2 (84-154)||(34744138-34744208)
chr2 (95-155)||(21340886-21340945)
[»] chr8 (2 HSPs)
chr8 (2-154)||(24219272-24219422)
chr8 (255-288)||(13956041-13956074)
[»] chr7 (6 HSPs)
chr7 (256-288)||(15660099-15660131)
chr7 (256-288)||(18846474-18846506)
chr7 (95-154)||(15953695-15953753)
chr7 (105-154)||(1947791-1947840)
chr7 (105-154)||(15925379-15925428)
chr7 (260-288)||(47790506-47790534)
[»] scaffold0513 (1 HSPs)
scaffold0513 (95-154)||(11092-11150)
[»] scaffold0510 (1 HSPs)
scaffold0510 (103-154)||(7838-7889)
[»] scaffold0053 (2 HSPs)
scaffold0053 (95-154)||(65985-66043)
scaffold0053 (95-154)||(71654-71712)


Alignment Details
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 12918139 - 12917989
Alignment:
Q  2 tcttttctgcacaaatcggttaagtaagatataaaaagcataatgagtcattttcttannnnnnnccatggtttttcctcaaataacttgtggaacaagt 101  Q
    |||||||||||||||| |||||| |||||||||||||||||||| || ||||||||||        ||||| |||||||||||||||||||| |||||||    
T  12918139 tcttttctgcacaaatgggttaaataagatataaaaagcataataagacattttcttacttttt--catggcttttcctcaaataacttgtgaaacaagt 12918042  T
Q  102 aatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    ||| |||||| | ||| |||||| |||||||||||||||||||||||||||||    
T  12918041 aatgaaaagtgcttaaaatacatcatgaatttaacactttctagcacttatca 12917989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 21683319 - 21683399
Alignment:
Q  74 ttttcctcaaataacttgtggaacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    |||||||||||||||||||  |||||||||| |||||| | ||| |||||  ||| |||||||||||||||||||||||||    
T  21683319 ttttcctcaaataacttgtaaaacaagtaatgaaaagtgcttaaaatacaccatggatttaacactttctagcacttatca 21683399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 3412463 - 3412313
Alignment:
Q  2 tcttttctgcacaaa-tcggttaagtaagatataaaaagcataatgagtcattttcttannnnnnnccatggtttttcctcaaataacttgtggaacaag 100  Q
    ||||||||||||||| | |||||||||||||||||||| || |||||| ||||||||||        |||   |||||||||| ||||||||  ||||||    
T  3412463 tcttttctgcacaaaatgggttaagtaagatataaaaaacacaatgagacattttcttactattt--cataacttttcctcaattaacttgtaaaacaag 3412366  T
Q  101 taatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    |||  ||||| | || | |||||||| ||||||||||||| |||||||||||||    
T  3412365 taactaaaag-tgcttacatacattaagaatttaacacttcctagcacttatca 3412313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 3664695 - 3664779
Alignment:
Q  70 tggtttttcctcaaataacttgtggaacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    |||||||||||   |||| ||||||||||||||||||||||| | ||||||| || ||||| |||  ||||||||||||||||||    
T  3664695 tggtttttccttggataatttgtggaacaagtaatcaaaagtgcataatatatatcatgaaattactactttctagcacttatca 3664779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 29413694 - 29413615
Alignment:
Q  74 ttttcctcaaataacttgtggaacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    |||||||  |||||||||   ||||||||| ||||||| ||||| ||| || ||||||||||||||| |||||||||||||    
T  29413694 ttttccttcaataacttgcaaaacaagtaa-caaaagtgcctaaaatatatcatgaatttaacacttcctagcacttatca 29413615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 5877434 - 5877492
Alignment:
Q  95 aacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    ||||||||| ||||||| ||||| ||| || ||||||||||||||| |||||||||||||    
T  5877434 aacaagtaa-caaaagtgcctaaaatatatcatgaatttaacacttcctagcacttatca 5877492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 22315044 - 22315102
Alignment:
Q  95 aacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    ||||||||| ||||||| ||||| ||| || ||||||||||||||| |||||||||||||    
T  22315044 aacaagtaa-caaaagtgcctaaaatatatcatgaatttaacacttcctagcacttatca 22315102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 156
Target Start/End: Complemental strand, 4643606 - 4643454
Alignment:
Q  2 tcttttctgcacaaatcggttaagtaagatataaaaagcataatgagtcattttcttannnnnnnccatggtttttcctcaaataacttgtggaacaagt 101  Q
    |||||||||||||||| |||||||||||||||||||||| |||| || ||||||||||        ||||| |||||||||||||||||||| |||||||    
T  4643606 tcttttctgcacaaatgggttaagtaagatataaaaagcctaataaggcattttcttacttttt--catggcttttcctcaaataacttgtgaaacaagt 4643509  T
Q  102 aatcaaaagttcctaatatacattatgaatttaacactttctagcacttatcaca 156  Q
    ||  |||||| | ||| |||||| ||| |||||||||||||||||| ||||||||    
T  4643508 aacaaaaagtgcttaaaatacatcatggatttaacactttctagcagttatcaca 4643454  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 25693172 - 25693221
Alignment:
Q  72 gtttttcctcaaataacttgtggaacaagtaatcaaaagttcctaatata 121  Q
    |||||||||||||||||||||| ||||| ||||||||||| | |||||||    
T  25693172 gtttttcctcaaataacttgtgaaacaaataatcaaaagtgcttaatata 25693221  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 32747585 - 32747643
Alignment:
Q  95 aacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    ||||||||| ||||||| ||||| ||| || ||||||||||||||| |||||||||||||    
T  32747585 aacaagtaa-caaaagtgcctaaaatatatcatgaatttaacacttcctagcacttatca 32747643  T

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Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 152
Target Start/End: Complemental strand, 5356854 - 5356705
Alignment:
Q  2 tcttttctgcacaaa-tcggttaagtaagatataaaaagcataatgagtcattttcttannnnnnnccatggtttttcctcaaataacttgtggaacaag 100  Q
    |||||||| |||||| | |||||||||| |||||||||||||||| || ||||||||||        ||||  |||||||||||||||||||  ||||||    
T  5356854 tcttttctacacaaaatgggttaagtaacatataaaaagcataattaggcattttcttactattt--catgccttttcctcaaataacttgtaaaacaag 5356757  T
Q  101 taatcaaaagttcctaatatacattatgaatttaacactttctagcacttat 152  Q
    ||||||||||| | |||||||||| ||| ||||||||||||||| |||||||    
T  5356756 taatcaaaagtgcttaatatacatcatggatttaacactttctaacacttat 5356705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 13432961 - 13433040
Alignment:
Q  75 tttcctcaaataacttgtggaacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    |||||||||||||||| || |||||||||||| |||| | ||||||||||||||| ||||||||||||||||||||||||    
T  13432961 tttcctcaaataacttttgaaacaagtaatcagaagtgcttaatatacattatgagtttaacactttctagcacttatca 13433040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 45619253 - 45619109
Alignment:
Q  8 ctgcacaaatcggttaagtaagatataaaaagcataatgagtcattttcttannnnnnnccatggtttttcctcaaataacttgtggaacaagtaatcaa 107  Q
    |||||||||| ||||||||||||||||||||| ||||| || ||||||||||        ||| |  ||||||||| ||||||||| |||||||||||||    
T  45619253 ctgcacaaatgggttaagtaagatataaaaagtataataaggcattttcttacttttt--catagcctttcctcaattaacttgtgaaacaagtaatcaa 45619156  T
Q  108 aagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    |||  | ||||||  || ||||| |||||||||||||||||||||||    
T  45619155 aagggcttaatatgaatcatgaaattaacactttctagcacttatca 45619109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 11912176 - 11912118
Alignment:
Q  95 aacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    ||||||||| ||||||| ||||| ||||||| |||||||||||||| |||||||||||||    
T  11912176 aacaagtaa-caaaagtgcctaaaatacattgtgaatttaacacttcctagcacttatca 11912118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 26622677 - 26622736
Alignment:
Q  95 aacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatcac 155  Q
    ||||||||| ||||||| ||||| ||| || ||||||||||||||| ||||||||||||||    
T  26622677 aacaagtaa-caaaagtgcctaaaatatatcatgaatttaacacttcctagcacttatcac 26622736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 32798930 - 32798989
Alignment:
Q  95 aacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatcac 155  Q
    ||||||||| ||||||| ||||| ||| || ||||||||||||||| ||||||||||||||    
T  32798930 aacaagtaa-caaaagtgcctaaaatatatcatgaatttaacacttcctagcacttatcac 32798989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 23761368 - 23761310
Alignment:
Q  95 aacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    ||||||||| ||||||| ||||| ||| || ||||||||||||||| |||||||||||||    
T  23761368 aacaagtaa-caaaagtgcctaaaatatatcatgaatttaacacttcctagcacttatca 23761310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 41304528 - 41304477
Alignment:
Q  103 atcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    ||||||||| ||||| ||| || ||||||||||||||| |||||||||||||    
T  41304528 atcaaaagtgcctaaaatatatcatgaatttaacacttcctagcacttatca 41304477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 30591 - 30511
Alignment:
Q  74 ttttcctcaaataacttgtggaacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    |||||||||||||||||||  |||||||||| |||||| | ||| |||||  ||| |||||||||||||||||||||||||    
T  30591 ttttcctcaaataacttgtaaaacaagtaatgaaaagtgcttaaaatacaccatggatttaacactttctagcacttatca 30511  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 4841098 - 4841019
Alignment:
Q  174 tacaatagcttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgtgtcttataacaa 253  Q
    ||||||| ||||||||||||||| ||  ||||||||||||||||||||||||||  ||||||| ||||||| || |||||    
T  4841098 tacaataacttgagtggtaagataccaaatgaactaacccagttgaactttttagaaatcttcaatgtgtcatacaacaa 4841019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 5161483 - 5161562
Alignment:
Q  174 tacaatagcttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgtgtcttataacaa 253  Q
    ||||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||| |||| | ||||| || |||||    
T  5161483 tacaataacttgagtggtaagataccttatgagctaacccagttgacctttttatcaaccttcaacgtgtcatacaacaa 5161562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 5183766 - 5183845
Alignment:
Q  174 tacaatagcttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgtgtcttataacaa 253  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||| || ||||  ||||||| ||||||| || |||||    
T  5183766 tacaataacttgagtggtaagattccttatgaactaaccaagttgacctctttagaaatcttcaatgtgtcatacaacaa 5183845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 5215310 - 5215377
Alignment:
Q  174 tacaatagcttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgt 241  Q
    ||||||| ||||||||||||||| ||  |||||||||||||||||||||||||||||| |||| ||||    
T  5215310 tacaataacttgagtggtaagataccaaatgaactaacccagttgaactttttatcaaccttcaatgt 5215377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 4855604 - 4855525
Alignment:
Q  174 tacaatagcttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgtgtcttataacaa 253  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||||| || ||||  ||| ||| ||||||| || |||||    
T  4855604 tacaataacttgagtggtaagataccttatgaactaaccaagttgacctctttagaaatattcaatgtgtcatacaacaa 4855525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 5174432 - 5174503
Alignment:
Q  182 cttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgtgtcttataacaa 253  Q
    ||||||||||||||| ||  |||||||||||||| | |||||||| |||| |||| ||||||| || |||||    
T  5174432 cttgagtggtaagatacccaatgaactaacccagctaaactttttgtcaaccttcaatgtgtcatacaacaa 5174503  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 5197173 - 5197244
Alignment:
Q  182 cttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgtgtcttataacaa 253  Q
    ||||||||||||||| ||  |||||||||||||| | |||||||| |||| |||| ||||||| || |||||    
T  5197173 cttgagtggtaagatacccaatgaactaacccagctaaactttttgtcaaccttcaatgtgtcatacaacaa 5197244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 30210593 - 30210523
Alignment:
Q  83 aataacttgtggaacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    |||||||||  |||||||||| ||||||| ||||| ||| || |||||||||||||||  ||||||||||||    
T  30210593 aataacttgcagaacaagtaa-caaaagtacctaaaatatatcatgaatttaacacttcgtagcacttatca 30210523  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 17864697 - 17864784
Alignment:
Q  68 catggtttttcctcaaataacttgtggaacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatcac 155  Q
    |||||||||||||   |||||||||| ||||||||| ||||||| | | ||||| || ||||| ||||||||||||||||||||||||    
T  17864697 catggtttttccttggataacttgtgaaacaagtaaccaaaagtacttgatatatatcatgaaattaacactttctagcacttatcac 17864784  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 36842963 - 36843042
Alignment:
Q  74 ttttcctcaaataacttgtggaacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    |||||||||||||||||||  |||||||||| ||| |||| ||| |||||| |||||||| ||||||||| ||||||||||    
T  36842963 ttttcctcaaataacttgtaaaacaagtaatgaaatgttcttaaaatacatcatgaattt-acactttcttgcacttatca 36843042  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 37438532 - 37438453
Alignment:
Q  75 tttcctcaaataacttgtggaacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    |||||| | ||||||| || ||||||||||| ||||| | ||||||| || ||||| |||||||||||||||||||||||    
T  37438532 tttccttagataacttctgaaacaagtaatctaaagtgcttaatatatatcatgaaattaacactttctagcacttatca 37438453  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 16816343 - 16816285
Alignment:
Q  95 aacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    ||||||||| ||||||| ||||| ||| || ||||||||||||||| |||||||||||||    
T  16816343 aacaagtaa-caaaagtgcctaaaatatatcatgaatttaacacttcctagcacttatca 16816285  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 16855500 - 16855442
Alignment:
Q  95 aacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    ||||||||| ||||||| ||||| ||| || ||||||||||||||| |||||||||||||    
T  16855500 aacaagtaa-caaaagtgcctaaaatatatcatgaatttaacacttcctagcacttatca 16855442  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 21066932 - 21066874
Alignment:
Q  95 aacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    ||||||||| ||||||| ||||| ||| || ||||||||||||||| |||||||||||||    
T  21066932 aacaagtaa-caaaagtgcctaaaatatatcatgaatttaacacttcctagcacttatca 21066874  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 34744208 - 34744138
Alignment:
Q  84 ataacttgtggaacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    |||||||||  ||||||||| ||||||| | ||||||| |  |||||||||  ||||||||||||||||||    
T  34744208 ataacttgtaaaacaagtaaccaaaagtgcttaatatataacatgaatttactactttctagcacttatca 34744138  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 21340945 - 21340886
Alignment:
Q  95 aacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatcac 155  Q
    ||||||||| ||||||| | ||| ||| || ||||||||||||||| ||||||||||||||    
T  21340945 aacaagtaa-caaaagtgcttaaaatatatcatgaatttaacacttcctagcacttatcac 21340886  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 24219422 - 24219272
Alignment:
Q  2 tcttttctgcacaaa-tcggttaagtaagatataaaaagcataatgagtcattttcttannnnnnnccatggtttttcctcaaataacttgtggaacaag 100  Q
    ||||||||||||||| | |||||||||||||||||||| || |||||| ||||||||||         ||   |||||||||| ||||||||  ||||||    
T  24219422 tcttttctgcacaaaatgggttaagtaagatataaaaaacacaatgaggcattttcttactatttt--ataacttttcctcaattaacttgtaaaacaag 24219325  T
Q  101 taatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    |||  ||||| | || | |||||||| ||||||||||||| |||||||||||||    
T  24219324 taactaaaag-tgcttacatacattaagaatttaacacttcctagcacttatca 24219272  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 288
Target Start/End: Complemental strand, 13956074 - 13956041
Alignment:
Q  255 ctgatagaaccctgagttcctgtacatgtgttgg 288  Q
    ||||||||||||||||||||||||||||||||||    
T  13956074 ctgatagaaccctgagttcctgtacatgtgttgg 13956041  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 15660099 - 15660131
Alignment:
Q  256 tgatagaaccctgagttcctgtacatgtgttgg 288  Q
    |||||||||||||||||||||||||||||||||    
T  15660099 tgatagaaccctgagttcctgtacatgtgttgg 15660131  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 18846506 - 18846474
Alignment:
Q  256 tgatagaaccctgagttcctgtacatgtgttgg 288  Q
    |||||||||||||||||||||||||||||||||    
T  18846506 tgatagaaccctgagttcctgtacatgtgttgg 18846474  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 15953695 - 15953753
Alignment:
Q  95 aacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    ||||||||| ||||||| ||||| ||| || ||||||||||||||| |||||||||||||    
T  15953695 aacaagtaa-caaaagtgcctaaaatatatcatgaatttaacacttcctagcacttatca 15953753  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 1947840 - 1947791
Alignment:
Q  105 caaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    ||||||| ||||| ||| || ||||||||||||||| |||||||||||||    
T  1947840 caaaagtgcctaaaatatatcatgaatttaacacttcctagcacttatca 1947791  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 15925379 - 15925428
Alignment:
Q  105 caaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    ||||||| | ||| ||| || |||||||||||||||||||||||||||||    
T  15925379 caaaagtgcataaaatatatcatgaatttaacactttctagcacttatca 15925428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 47790534 - 47790506
Alignment:
Q  260 agaaccctgagttcctgtacatgtgttgg 288  Q
    |||||||||||||||||||||||||||||    
T  47790534 agaaccctgagttcctgtacatgtgttgg 47790506  T

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Target: scaffold0513 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 11150 - 11092
Alignment:
Q  95 aacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    ||||||||| ||||||| ||||| ||| || ||||||||||||||| |||||||||||||    
T  11150 aacaagtaa-caaaagtgcctaaaatatatcatgaatttaacacttcctagcacttatca 11092  T

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Target: scaffold0510 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 7889 - 7838
Alignment:
Q  103 atcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    ||||||||| ||||| ||| || ||||||||||||||| |||||||||||||    
T  7889 atcaaaagtgcctaaaatatatcatgaatttaacacttcctagcacttatca 7838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 65985 - 66043
Alignment:
Q  95 aacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    ||||||||| ||||||| ||||| ||| || ||||||||||||||| |||||||||||||    
T  65985 aacaagtaa-caaaagtgcctaaaatatatcatgaatttaacacttcctagcacttatca 66043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 71654 - 71712
Alignment:
Q  95 aacaagtaatcaaaagttcctaatatacattatgaatttaacactttctagcacttatca 154  Q
    ||||||||| ||||||| ||||| ||| || ||||||||||||||| |||||||||||||    
T  71654 aacaagtaa-caaaagtgcctaaaatatatcatgaatttaacacttcctagcacttatca 71712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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