View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4167_high_16 (Length: 297)
Name: NF4167_high_16
Description: NF4167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4167_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 45094807 - 45094543
Alignment:
| Q |
15 |
ttatggaaagtgtaaaatgaataaactctcatttttcatagatggaaaagcaagtacataaagtatttatatgaatacaaagctcctaattacatgctaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45094807 |
ttatggaaagtgtaaaatgaataaactctcatttttcatagatggaaaagcaagtacataaagtatttatatgaatacaaagctcctaattacatgctaa |
45094708 |
T |
|
| Q |
115 |
tctcaattagtaagctaagctatattaagtaacttgtacttcaagtaagctagagttcatgtagggttcttgtgtagctttcttctcttcctttccttct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45094707 |
tctcaattagtaagctaagctatattaagtaacttgtacttcaagtaagctagagttcatgtagggttcttgtgtagctttcttctcttcctttccttct |
45094608 |
T |
|
| Q |
215 |
ttctctaatatgtgtggcataccatttgaacatctcgaattttattgaaggaaggataccattag |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45094607 |
ttctctaatatgtgtggcataccatttgaacatctcgaattttattgaaggaaggataccattag |
45094543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 32 - 162
Target Start/End: Complemental strand, 12298816 - 12298686
Alignment:
| Q |
32 |
tgaataaactctcatttttcatagatggaaaagcaagtacataaagtatttatatgaatacaaagctcctaattacatgctaatctcaattagtaagcta |
131 |
Q |
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||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |
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| T |
12298816 |
tgaataaactctcatttctcctagatggaaaagcaagtacaaggagtatttatatgaatacaaagctcccaattagatgctaatctcaattagtaaacta |
12298717 |
T |
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| Q |
132 |
agctatattaagtaacttgtacttcaagtaa |
162 |
Q |
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| T |
12298716 |
agctatactaagtaacttatacatcaagtaa |
12298686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 31962934 - 31962830
Alignment:
| Q |
12 |
ttgttatggaaagtgtaaaatgaataaactctcatttttcatagatggaaaagcaagtacataaagtatttatatgaatacaaagctcctaattacatgc |
111 |
Q |
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|||||||| || ||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| |
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| T |
31962934 |
ttgttatgaaatgtgcaaaatgaataaactctcatttctcatagatggaaaagcaagtacaaggagtatttatagagatacaaagctcctaatttcatgc |
31962835 |
T |
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| Q |
112 |
taatc |
116 |
Q |
| |
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||||| |
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| T |
31962834 |
taatc |
31962830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 31961013 - 31960931
Alignment:
| Q |
28 |
aaaatgaataaactctcatttttcatagatggaaaagcaagtacataaagtatttatatgaatacaaagctcctaattacatg |
110 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||| |
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| T |
31961013 |
aaaatgaataaactctcatttctcatagatggaaaagcaagtacaaggagtatttatagagatacaaggctcctaattacatg |
31960931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 162
Target Start/End: Complemental strand, 28557926 - 28557780
Alignment:
| Q |
15 |
ttatggaaagtgtaaaatgaataaactctcatttttcatagatggaaaagcaagtacataaagtatttatatgaatacaaagctcctaattacatgctaa |
114 |
Q |
| |
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||||| || |||||||||| |||| ||||||| | ||| ||||| | | ||||||||| ||||||||| | ||||||||||||||||||||||||| |
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| T |
28557926 |
ttatgaaatgtgtaaaatggataagctctcatgtctcacagatgaattaacaagtacatggagtatttattagtgtacaaagctcctaattacatgctaa |
28557827 |
T |
|
| Q |
115 |
tctcaattagtaagctaagctatattaagtaacttgtacttcaagtaa |
162 |
Q |
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||||||||| ||| |||||||| | |||||||||||| |||||||| |
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| T |
28557826 |
tctcaattattaa-ctaagctaaacatagtaacttgtacatcaagtaa |
28557780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 28562624 - 28562511
Alignment:
| Q |
12 |
ttgttatggaaagtgtaaaa-tgaataaactctcatttttcatagatggaaaagcaagtacataaagtatttatat--gaatacaaagctcctaattaca |
108 |
Q |
| |
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||||||||||| | |||||| || |||| ||||||||| |||||||| | | ||||||||| |||||||||| | |||||||||||||||| ||| |
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| T |
28562624 |
ttgttatggaatgcgtaaaaatggataagctctcatttcacatagatgaattaacaagtacatggagtatttataatggtatacaaagctcctaat-aca |
28562526 |
T |
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| Q |
109 |
tgctaatctcaatta |
123 |
Q |
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||||||||||||||| |
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| T |
28562525 |
tgctaatctcaatta |
28562511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 162
Target Start/End: Original strand, 18962352 - 18962469
Alignment:
| Q |
44 |
catttttcatagatggaaaagcaagtacataaagtatttatatgaatacaaagctcctaattacatgctaatctcaattagtaagctaagctatattaag |
143 |
Q |
| |
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||||| ||||||||| | |||||| |||| |||||||||| || ||||||||||||||||||||| |||||||||||| ||| ||||| ||| |||| |
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| T |
18962352 |
catttctcatagatgaataagcaactacaaggagtatttataagagtacaaagctcctaattacatgttaatctcaattattaa-ctaagttatgctaag |
18962450 |
T |
|
| Q |
144 |
taacttgtacttcaagtaa |
162 |
Q |
| |
|
|||||||||| |||||||| |
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| T |
18962451 |
taacttgtacatcaagtaa |
18962469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 18962294 - 18962354
Alignment:
| Q |
13 |
tgttatggaaagtgtaaaatgaataaactctcatttttcatagatggaaaagcaagtacat |
73 |
Q |
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|||||||||| |||||||||||| |||||||||||| ||||||||| | |||||||||||| |
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| T |
18962294 |
tgttatggaatgtgtaaaatgaacaaactctcatttctcatagatgaataagcaagtacat |
18962354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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