View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4167_high_20 (Length: 265)
Name: NF4167_high_20
Description: NF4167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4167_high_20 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 41841538 - 41841802
Alignment:
| Q |
1 |
aatcaactttccagaatcagtgattcgttttatatgcagaccacaaatctatttacacataatcataatcatcagaataaataccaacattacctacaat |
100 |
Q |
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| T |
41841538 |
aatcaactttccagaatcagtgattcgttttatatgcagaccacaaatctatttacacataatcataatcgtcagaataaataccaacattacctacaat |
41841637 |
T |
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| Q |
101 |
gaaaccacaagttatttctgagacgatgtgtatatcaaaatcatttgacatcagtttcacccaaaaacacatatactagtaaaattaacttgtaattact |
200 |
Q |
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| T |
41841638 |
gaaaccacaagttatttctgagacgatgtgtatatcaaaatcatttgacatcagtttcacccaaaaacacatatactagtaaaattaacatgtaattact |
41841737 |
T |
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| Q |
201 |
ccaaagaacataggctaaaaagcgtgcatgtagacggcaatacatatacagttagcataaactaa |
265 |
Q |
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| T |
41841738 |
ccaaagaacataggctaaaaagtgtgcatgtagacggcaatacatatacagttagcataaactaa |
41841802 |
T |
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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 265
Target Start/End: Original strand, 41841508 - 41841537
Alignment:
| Q |
236 |
ggcaatacatatacagttagcataaactaa |
265 |
Q |
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| T |
41841508 |
ggcaatacatatacagttagcataaactaa |
41841537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 3461749 - 3461833
Alignment:
| Q |
174 |
tactagtaaaattaacttgtaattactccaaagaacataggctaaaaagcgtgcatgtagacggcaatacatatacagttagcat |
258 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||| |
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| T |
3461749 |
tactagtaaaattatcatgtaattactccaaagaacataggctaaaaagtgtgtatgtagacagcaatacatatacagtttgcat |
3461833 |
T |
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