View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4167_high_8 (Length: 402)

Name: NF4167_high_8
Description: NF4167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4167_high_8
NF4167_high_8
[»] chr2 (27 HSPs)
chr2 (1-391)||(10372259-10372649)
chr2 (78-386)||(10353515-10353832)
chr2 (117-386)||(10348185-10348454)
chr2 (121-257)||(10336367-10336503)
chr2 (119-259)||(9316558-9316698)
chr2 (106-349)||(9321407-9321659)
chr2 (112-255)||(8572958-8573101)
chr2 (72-259)||(9283603-9283790)
chr2 (117-259)||(9357710-9357852)
chr2 (187-259)||(9275051-9275123)
chr2 (117-344)||(9329035-9329271)
chr2 (117-225)||(7115110-7115218)
chr2 (287-349)||(9357614-9357676)
chr2 (190-258)||(12005658-12005726)
chr2 (108-259)||(9292458-9292609)
chr2 (286-349)||(10336275-10336338)
chr2 (293-349)||(9283833-9283889)
chr2 (287-349)||(9292359-9292421)
chr2 (189-245)||(8579032-8579088)
chr2 (13-61)||(9292638-9292686)
chr2 (12-59)||(9060488-9060535)
chr2 (190-237)||(11987021-11987068)
chr2 (192-235)||(16269456-16269499)
chr2 (17-62)||(9321697-9321745)
chr2 (190-259)||(9060666-9060735)
chr2 (287-344)||(9060772-9060829)
chr2 (291-344)||(9274948-9275001)
[»] chr8 (1 HSPs)
chr8 (121-258)||(41966185-41966322)
[»] chr4 (1 HSPs)
chr4 (99-386)||(26575267-26575563)
[»] chr3 (2 HSPs)
chr3 (105-246)||(37463041-37463182)
chr3 (285-349)||(37462929-37462993)
[»] scaffold0667 (1 HSPs)
scaffold0667 (117-342)||(4921-5149)
[»] chr1 (1 HSPs)
chr1 (288-349)||(29452951-29453012)


Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 10372649 - 10372259
Alignment:
Q  1 caaatcgatgacgatgatgatgatttctctaaatcgaggattccactcaaccatcctttcacggcgggtaacaccagcaacatcgaccctttcgaggtta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10372649 caaatcgatgacgatgatgatgatttctctaaatcgaggattccactcaaccatcctttcacggcgggtaacaccagcaacattgaccctttcgaggtta 10372550  T
Q  101 acaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10372549 acaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctgcaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacatt 10372450  T
Q  201 ctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcctattcttgaccccacaatcaaagcctccttatgtgttcatggc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  10372449 ctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcctattcttgaccccacaatcagagcctccttatgcgttcatggc 10372350  T
Q  301 ttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccacaggttc 391  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  10372349 ttcggttttgattctttatccggcgatcacaaactcctcagaatctcttacttaatcgaccaccaaagcactttttatgatccacatgttc 10372259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 78 - 386
Target Start/End: Complemental strand, 10353832 - 10353515
Alignment:
Q  78 caacatcgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaaccct 177  Q
    ||||||||| |||||| ||| |||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||  | | |||||||   | |||    
T  10353832 caacatcgatcctttcaagggtaacaacaccattactcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatagctttcacgcatcct 10353733  T
Q  178 tgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta---ttct------tgacc 268  Q
       | |||||| ||||||||| | |||||||| ||||||||||| ||| || ||||||||||||||||||||||||| ||||   ||||      ||||     
T  10353732 aacgcccccaacgaaatcacaatatggaaccccaacacccgtaagcatcggattatcccttttctccctcttcctatccctaacattctccaatctgaca 10353633  T
Q  269 ccacaatcaaagcctccttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaag 368  Q
     | | | |   | || |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||  |||| |  ||||     
T  10353632 accctaaccgtggctgcttatgcgttcatggcttcggttttgattctgtatccggcgattacaaactcctcagaatctctaacttgctcgatctacaaaa 10353533  T
Q  369 cactttttatgatccaca 386  Q
    | ||||||||||||||||    
T  10353532 ccctttttatgatccaca 10353515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 117 - 386
Target Start/End: Complemental strand, 10348454 - 10348185
Alignment:
Q  117 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 216  Q
    |||||||||||||||||||||||||||||||||||  ||   | ||| |||||   | |||    ||| ||| ||||||||| |||||||||||||||||    
T  10348454 tatcggttcatgtaacggcctcctcgccatctccacaggggtaatcgttttcacgcatcctaacaacctcaacgaaatcacaatctggaaccctaacacc 10348355  T
Q  217 cgtaaacatagggttatcccttttctccctcttcctattcctattcttgac-cccacaatcaaagcctccttatgtgttcatggcttcggttttgattct 315  Q
    |||||||||    ||||||||||||||||||||||||||||||||||| ||  | || | ||||  ||||||||| ||||| |||||||||||||||       
T  10348354 cgtaaacatcacattatcccttttctccctcttcctattcctattcttaactacgacga-caaatgctccttatgcgttcacggcttcggttttgatcaa 10348256  T
Q  316 ttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccaca 386  Q
     ||||||| |||||||||||||||||||| ||| ||||| |||| |  || | | ||||||||||||||||    
T  10348255 atatccggtgattacaaactcctcagaatttctcacttactcgatctacagaaccctttttatgatccaca 10348185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 121 - 257
Target Start/End: Complemental strand, 10336503 - 10336367
Alignment:
Q  121 ggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgta 220  Q
    |||||||| || |||||||||||||||||||| ||| || ||||||||| ||||||||    | ||||||||||| ||||||| || |||| || |||||    
T  10336503 ggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcgcattctgtaatcctaccatccgta 10336404  T
Q  221 aacatagggttatcccttttctccctcttcctattcc 257  Q
    ||||| || ||||||||| ||||||||||||||||||    
T  10336403 aacatcggattatcccttatctccctcttcctattcc 10336367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 119 - 259
Target Start/End: Complemental strand, 9316698 - 9316558
Alignment:
Q  119 tcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccg 218  Q
    ||||||||||||||||||| |||||||| ||||| ||  || ||||||||||  | ||||  | | |||| ||||||||| |||||||||||||||||||    
T  9316698 tcggttcatgtaacggccttctcgccatttccaatggtcaaatcgctttcatgcatccttacggcgccaacgaaatcacaatctggaaccctaacacccg 9316599  T
Q  219 taaacatagggttatcccttttctccctcttcctattccta 259  Q
    ||||||| |  |||||||||| || |||||| |||| ||||    
T  9316598 taaacatcgtattatccctttccttcctcttgctatcccta 9316558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 106 - 349
Target Start/End: Complemental strand, 9321659 - 9321407
Alignment:
Q  106 accatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctgga 205  Q
    |||||| ||| ||||||||| |||||||||||||||||||||||| ||||| || | ||||||| | | |||    ||||||| ||||||||| ||||||    
T  9321659 accatggctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctgga 9321560  T
Q  206 accctaacacccgtaaacatagggttatcccttttctccctcttcctattcct---attcttgacccc-acaa--tcaaa-gc--ctccttatgtgttca 296  Q
    |||||| ||| ||||| ||| |  | |||||||| || ||||||||||| |||   ||| | ||  || ||||  ||||  ||  || |||||| |||||    
T  9321559 accctagcactcgtaagcatcgtatgatccctttcctacctcttcctatccctgacattatggaatccgacaacatcaatcgctgctgcttatgcgttca 9321460  T
Q  297 tggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 349  Q
    ||| |||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  9321459 tggtttcggttttgatcctttaaccggcgattacaaactcctcagaatctctt 9321407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 255
Target Start/End: Original strand, 8572958 - 8573101
Alignment:
Q  112 actcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaacccta 211  Q
    |||| |||||||||||||||||||||||||||||| || || ||   | ||||||| | | | |||  |||| ||||  ||||| || ||||||||||||    
T  8572958 actcttatcggttcatgtaacggcctcctcgccatttctaatggtttaatcgctttgactcaacctaatgacgccaaccaaatcgcaatctggaacccta 8573057  T
Q  212 acacccgtaaacatagggttatcccttttctccctcttcctatt 255  Q
    ||||||||||||||    ||||||||||||||||||||||||||    
T  8573058 acacccgtaaacatcacattatcccttttctccctcttcctatt 8573101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 259
Target Start/End: Original strand, 9283603 - 9283790
Alignment:
Q  72 caccagcaacatcgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcatt 171  Q
    ||||| ||||||||| ||||||  | |||||| || || | ||| ||| |||||||||||||||||||||||||||| ||| |||  | | ||||| |      
T  9283603 caccaccaacatcgatcctttcacgcttaacagcatcaaggctcttattggttcatgtaacggcctcctcgccatctacaatggcccaattgcttttacg 9283702  T
Q  172 aacccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 259  Q
     | ||    ||| | | |||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||| ||||    
T  9283703 catccaaacgacgcaactgaaatcacaatctggaacactaacacccgtaaacattggattatcccttttctccctcttcctatcccta 9283790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 117 - 259
Target Start/End: Complemental strand, 9357852 - 9357710
Alignment:
Q  117 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 216  Q
    |||||||||||||||||||||||||||||||||||| ||| || |||||||||   | |||   | | |||| |||||| || ||||||||| ||||| |    
T  9357852 tatcggttcatgtaacggcctcctcgccatctccaatggcgaaatcgctttcaggcatcctaacgccgccaacgaaatctcaatctggaaccataacatc 9357753  T
Q  217 cgtaaacatagggttatcccttttctccctcttcctattccta 259  Q
    |||||||||    |||||||||| |||||||||||||| ||||    
T  9357752 cgtaaacatcacattatccctttcctccctcttcctatcccta 9357710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 9275123 - 9275051
Alignment:
Q  187 aatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 259  Q
    |||||||| ||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||    
T  9275123 aatgaaattacaatctggaaccctaacaccggtaaacatcggattatcccttttctccctcttcctataccta 9275051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 344
Target Start/End: Complemental strand, 9329271 - 9329035
Alignment:
Q  117 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 216  Q
    |||||||||||| ||||||||| | || |||||| | ||| || ||||||| |   |||||   | |||||| ||||||||| |||||||||||||||||    
T  9329271 tatcggttcatgcaacggcctcattgctatctcctatggccaaatcgcttttagggaccctaacggccccaacgaaatcacaatctggaaccctaacacc 9329172  T
Q  217 cgtaaacatagggttatcccttttctccctcttcctattccta---ttcttgacccc----acaatcaaagc--ctccttatgtgttcatggcttcggtt 307  Q
    ||||||||| |  |||||||||| || |||||| |||| ||||   |||||||  |     |||  ||  ||  ||||||||| ||||| || |||||||    
T  9329171 cgtaaacatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccatcgcttctccttatgcgttcacggtttcggtt 9329072  T
Q  308 ttgattctttatccggcgattacaaactcctcagaat 344  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  9329071 ttgatcctttatccggtgattacaaactcctcagaat 9329035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 225
Target Start/End: Original strand, 7115110 - 7115218
Alignment:
Q  117 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 216  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||| |   | |||  | || | | |||||||||| |||||||| ||||||||    
T  7115110 tatcggttcatgtaacggcctcctcgccatctccaatggccaaatcgcttttacgtatcctaatcacgcaactgaaatcacaatctggaacactaacacc 7115209  T
Q  217 cgtaaacat 225  Q
    |||||||||    
T  7115210 cgtaaacat 7115218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 349
Target Start/End: Complemental strand, 9357676 - 9357614
Alignment:
Q  287 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 349  Q
    |||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  9357676 tatgcgttcacggcttcggttttgatcctttaaccggcgattacaaactcctcagaatctctt 9357614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 12005658 - 12005726
Alignment:
Q  190 gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcct 258  Q
    |||||||| |||||||||||||||| |||||||||| || ||||||||  ||||||| |||||||||||    
T  12005658 gaaatcactttctggaaccctaacatccgtaaacatcggattatccctaatctccctattcctattcct 12005726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 259
Target Start/End: Complemental strand, 9292609 - 9292458
Alignment:
Q  108 catgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaac 207  Q
    |||| ||| ||| |||||||||||||||||||||||||| |||||  || || ||   ||||   | ||||  | ||| || ||||||||| ||| ||||    
T  9292609 catgcctcttattggttcatgtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaac 9292510  T
Q  208 cctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 259  Q
    |||||||| | ||||||| || |||||||||||||||||||| |||| ||||    
T  9292509 cctaacactcataaacatcggattatcccttttctccctcttgctatcccta 9292458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 349
Target Start/End: Complemental strand, 10336338 - 10336275
Alignment:
Q  286 ttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 349  Q
    ||||| ||||| || |||||||||||||| ||||||| ||||||||||||||||||||| ||||    
T  10336338 ttatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctctt 10336275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 349
Target Start/End: Original strand, 9283833 - 9283889
Alignment:
Q  293 ttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 349  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||||| |||| ||||    
T  9283833 ttcacggcttcggttttgatcctttaaccggcgattacaaactcctccgaatctctt 9283889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 349
Target Start/End: Complemental strand, 9292421 - 9292359
Alignment:
Q  287 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 349  Q
    |||| ||||| |||||||||| |||| | ||| ||||||||||||||||||||||||| ||||    
T  9292421 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctctt 9292359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 8579032 - 8579088
Alignment:
Q  189 tgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccc 245  Q
    ||||||| | |||||||||||||||| |||||||||| | |||||||||| ||||||    
T  8579032 tgaaatcgctttctggaaccctaacatccgtaaacatcgagttatcccttatctccc 8579088  T

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Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 9292686 - 9292638
Alignment:
Q  13 gatgatgatgatttctctaaatcgaggattccactcaaccatcctttca 61  Q
    ||||||||||||||||| || ||||  ||||||||||||||||||||||    
T  9292686 gatgatgatgatttctccaagtcgattattccactcaaccatcctttca 9292638  T

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Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 9060488 - 9060535
Alignment:
Q  12 cgatgatgatgatttctctaaatcgaggattccactcaaccatccttt 59  Q
    |||||||||||||||||||||||| | ||| || ||||||||||||||    
T  9060488 cgatgatgatgatttctctaaatcaatgataccgctcaaccatccttt 9060535  T

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Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 11987021 - 11987068
Alignment:
Q  190 gaaatcacattctggaaccctaacacccgtaaacatagggttatccct 237  Q
    |||||| | ||||||||||||||||||||||||||| || ||||||||    
T  11987021 gaaatcgctttctggaaccctaacacccgtaaacatcggattatccct 11987068  T

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Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 16269499 - 16269456
Alignment:
Q  192 aatcacattctggaaccctaacacccgtaaacatagggttatcc 235  Q
    ||||||||||||||||||||||||| |||||||| || ||||||    
T  16269499 aatcacattctggaaccctaacacctgtaaacattggattatcc 16269456  T

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Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 9321745 - 9321697
Alignment:
Q  17 atgatgatttctctaaatc---gaggattccactcaaccatcctttcac 62  Q
    |||||||||||||||||||   || ||||||||||||||||||||||||    
T  9321745 atgatgatttctctaaatccatgatgattccactcaaccatcctttcac 9321697  T

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Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 9060666 - 9060735
Alignment:
Q  190 gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 259  Q
    |||| |||| ||||||||||||||||||| ||| || ||   ||||||||| ||||||||||||| ||||    
T  9060666 gaaaccacaatctggaaccctaacacccgcaaagatcggaccatcccttttatccctcttcctatcccta 9060735  T

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Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 9060772 - 9060829
Alignment:
Q  287 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaat 344  Q
    |||| ||||| ||||||||||||||| | ||  ||| |||||||||||||||||||||    
T  9060772 tatgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaat 9060829  T

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Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 9275001 - 9274948
Alignment:
Q  291 tgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaat 344  Q
    |||||| || || ||||||||| |||||||||||||||| ||||| ||||||||    
T  9275001 tgttcacggttttggttttgatcctttatccggcgattataaacttctcagaat 9274948  T

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Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 121 - 258
Target Start/End: Original strand, 41966185 - 41966322
Alignment:
Q  121 ggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgta 220  Q
    |||||||||||||||||||||  ||||||||| ||| || ||| ||||  ||||||||  |||   |||||||||||||||||||||||||||| | |||    
T  41966185 ggttcatgtaacggcctcctctgcatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccctaacatctgta 41966284  T
Q  221 aacatagggttatcccttttctccctcttcctattcct 258  Q
    ||||| || ||||||||||||||||| |||||||||||    
T  41966285 aacatcggattatcccttttctccctattcctattcct 41966322  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 99 - 386
Target Start/End: Complemental strand, 26575563 - 26575267
Alignment:
Q  99 taacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcaca 198  Q
    |||||||||| | |||| |||||||||||||||||||||||||||||| ||| |||||  | | |||||||   | ||    | |||||| |||||| ||    
T  26575563 taacaacacccttactcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatggctttcacgcatcccaacgcccccaacgaaatcgca 26575464  T
Q  199 ttctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta---ttct------tgaccccac-aatcaaagcctcctta 288  Q
     ||||||||||| ||||| ||||| || || |||||||||||||||||||||| || ||||   ||||      ||||  | | ||||   || | ||||    
T  26575463 atctggaacccttacaccggtaaatatcggattatcccttttctccctcttcccatccctaacattctccaatctgacaaccctaatcgtggc-tgctta 26575365  T
Q  289 tgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccaca 386  Q
    || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| |  |||| | ||||||||||||||||    
T  26575364 tgcgttcacggcttcggttttgattctttatccggcgattacaaactcctcagaatctcttacttgctcgatctacaaaaccctttttatgatccaca 26575267  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 105 - 246
Target Start/End: Complemental strand, 37463182 - 37463041
Alignment:
Q  105 caccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctgg 204  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||||| ||| || |||||||||   | |||   | | |||| ||||||||| |||||    
T  37463182 caccatggctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctgg 37463083  T
Q  205 aaccctaacacccgtaaacatagggttatcccttttctccct 246  Q
    ||||||||||| |||||||||  | |||||||||||||||||    
T  37463082 aaccctaacacacgtaaacatctgattatcccttttctccct 37463041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 285 - 349
Target Start/End: Complemental strand, 37462993 - 37462929
Alignment:
Q  285 cttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 349  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  37462993 cttatgcgttcacggcttcggttttgattctttaaccggcgattacaaactcctcagaatctctt 37462929  T

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Target: scaffold0667 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 117 - 342
Target Start/End: Complemental strand, 5149 - 4921
Alignment:
Q  117 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 216  Q
    |||||||||||||||||||||||||||| | ||||||||| || ||||| |||   | |||   | | |||| ||||||||| ||||||||||||||| |    
T  5149 tatcggttcatgtaacggcctcctcgccgtttccaacggcgaaatcgctctcagacatcctaacgccgccaacgaaatcacaatctggaaccctaacatc 5050  T
Q  217 cgtaaacatagggttatcccttttctccctcttcctattccta----ttcttgaccccacaatcaaagcctccttatgtgttcatggcttcggttttgat 312  Q
    |||||||||    ||||||||||||||||||| |||||| ||     ||||  | || ||| | ||   ||||||||| ||||| |||||||||||||||    
T  5049 cgtaaacatcacattatcccttttctccctctacctattactcctcgttctccatccgaca-tgaactgctccttatgcgttcacggcttcggttttgat 4951  T
Q  313 tctttatccggcgattacaaactcctcaga 342  Q
     ||||| |||||||||||||| ||||||||    
T  4950 cctttaaccggcgattacaaaatcctcaga 4921  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 29452951 - 29453012
Alignment:
Q  288 atgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 349  Q
    ||||||||| ||||| ||||||||| | |||  || ||||||||||||||||||||| ||||    
T  29452951 atgtgttcacggctttggttttgatccgttaaacgtcgattacaaactcctcagaatctctt 29453012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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