View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4167_low_11 (Length: 365)
Name: NF4167_low_11
Description: NF4167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4167_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 39603609 - 39603270
Alignment:
| Q |
18 |
tgtttatgtttatattttccttatgtctattgtatgaattgtaaattgtagctttgaaacctatttatggaacaagaaatttgtgtttgattatatctac |
117 |
Q |
| |
|
||||| ||| || |||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||| ||| |||| ||||| |
|
|
| T |
39603609 |
tgtttgtgtctacattttcattatgtctattgtatgaattataaattgtagctttgaaacctatgtatggaacaagaattttgtgcttgcttatgtctac |
39603510 |
T |
|
| Q |
118 |
cacttgaactccaaggtgattgaaacaattatcaagttcaaggtgattgaaacaatcatgatttggatcttacttatttgattttattttttagatatgg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39603509 |
tacttgaactccaaggtgattgaaacaattatcaagtttaaggtgattgaaacaatcatgatttagatcttacttatttgattttattttgtagatatgg |
39603410 |
T |
|
| Q |
218 |
agtcttcatgttctccacaatccaagatacca--cacac-ttcatctgctacctctaaggaagaaccaaaggcttcactagttaatgaaggaatgacgaa |
314 |
Q |
| |
|
||| |||| ||| ||||||| ||||| ||||| ||| || ||||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||| |
|
|
| T |
39603409 |
agttttcacgttgtccacaacccaagttaccatttccacttttatctgctacctctaagggagaaccaaaggtttcactagttaatgacaaaatgatgaa |
39603310 |
T |
|
| Q |
315 |
tatacaagaaatagcagatg-gagaaaggttgtctctgct |
353 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39603309 |
tataaaagaaatagcagatgagagaaaggttgtctctgct |
39603270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 134 - 348
Target Start/End: Complemental strand, 21827749 - 21827531
Alignment:
| Q |
134 |
tgattgaaacaattatcaagttcaaggtgattgaaacaatcatgatttggatcttacttatttgattttattttttagatatggagtcttcatgttctcc |
233 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
21827749 |
tgattgaaacagttatcaagtttaaggtgattgaaacaatcatgatttggatcttacttatttgattttattttgtagatatggagtcttcatgttgtcc |
21827650 |
T |
|
| Q |
234 |
acaatccaagatacca---cacacttcatctgctacctctaaggaagaaccaaaggcttcactagttaatgaaggaatgacgaatatacaagaaatagca |
330 |
Q |
| |
|
|||||||||| | ||| | |||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
21827649 |
acaatccaagttgccatttccaactttatctgctacctctaagggagaaccaaaggtttcactagttaatgacggaatgatgaatatacaagaaatagcg |
21827550 |
T |
|
| Q |
331 |
gatg-gagaaaggttgtct |
348 |
Q |
| |
|
|||| ||||||| |||||| |
|
|
| T |
21827549 |
gatgagagaaagcttgtct |
21827531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 21827851 - 21827774
Alignment:
| Q |
18 |
tgtttatgtttatattttccttatgtctattgtatgaattgtaaattgtagctttgaaacctatttatggaacaagaa |
95 |
Q |
| |
|
||||| ||| || |||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21827851 |
tgtttgtgtctacattttctttatgtctattgtatgaactgtaaattgtagctttgaaacctatgtatggaacaagaa |
21827774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 194 - 353
Target Start/End: Complemental strand, 43022325 - 43022162
Alignment:
| Q |
194 |
tttgattttattttttagatatggagtcttcatgttctccacaatccaagatacca----cacacttcatctgctacctctaaggaagaaccaaaggctt |
289 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||| ||||| ||||||||||| || ||||||||||||||||| |||| ||||||||||| || |
|
|
| T |
43022325 |
tttgattttattttccagatatggagtcttctcgttgcccacagcccaagataccatcttca-acttcatctgctacctccaagggagaaccaaaggttt |
43022227 |
T |
|
| Q |
290 |
cactagttaatgaaggaatgacgaatatacaagaaatagcagatg-gagaaaggttgtctctgct |
353 |
Q |
| |
|
||| |||||||||||||||||| |||||||| |||||||| | || || ||||| |||||||||| |
|
|
| T |
43022226 |
cacaagttaatgaaggaatgacaaatatacaggaaatagctgctgagataaaggatgtctctgct |
43022162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 42812035 - 42811989
Alignment:
| Q |
146 |
ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42812035 |
ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt |
42811989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 43022414 - 43022368
Alignment:
| Q |
146 |
ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43022414 |
ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt |
43022368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 328
Target Start/End: Complemental strand, 42811883 - 42811808
Alignment:
| Q |
253 |
acttcatctgctacctctaaggaagaaccaaaggcttcactagttaatgaaggaatgacgaatatacaagaaatag |
328 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||||| ||||| |||||||||||||||| | |||||||| ||||||| |
|
|
| T |
42811883 |
acttcatctgcaacctccaagggagaaccaaaggtttcacaagttaatgaaggaatggcaaatatacaggaaatag |
42811808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 35061082 - 35061042
Alignment:
| Q |
149 |
tcaagttcaaggtgattgaaacaatcatgatttggatctta |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35061082 |
tcaagttcaaggtgattgaaacaatcatgatttggatctta |
35061042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University