View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4167_low_2 (Length: 595)
Name: NF4167_low_2
Description: NF4167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4167_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 8 - 580
Target Start/End: Original strand, 48592539 - 48593108
Alignment:
| Q |
8 |
agcagaacctgtgagggctttggttcgcgaggtaacacaaatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaa |
107 |
Q |
| |
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|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592539 |
agcagaacaagttagggctttggttcgcgaggtaacacagatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaa |
48592638 |
T |
|
| Q |
108 |
ggttttaaaaagagggccttggacatacacaaaaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaagggaagccaagctaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592639 |
ggttttaaaaagagggccttggacatacacaaaaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaagggaagccaagctaa |
48592738 |
T |
|
| Q |
208 |
tagatggtggtggtgagaatggtgaagaagagagactgaaagattttcttgacattttgctagatgtctacagtgagaaagaccgtgaagtcaactttac |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
48592739 |
tagatggtggtggtgagaatggtgaagaagagagactgaaagattttcttgacattttgctagatgtctacagtgagaaaaactgtgaagtcaactttac |
48592838 |
T |
|
| Q |
308 |
tagaaatcatatcaaatcattaatattggtatgtatataacttctcctcatactttttatgtaattataaaagnnnnnnnnnnnaccctagtaagttata |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48592839 |
tagaaatcatatcaaatcattaatattggtacgtatataacttctcctcatactttttatgtaattataa---ttttttttttgaccctagtaagttata |
48592935 |
T |
|
| Q |
408 |
aaacattgttggattattgttattaaattatttcttcaaaaaataataaatgtcaggattactttacggcagcaaccgacactactgccatctccgtgga |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592936 |
aaacattgttggattattgttattaaattatttcttcaaaaaataataaatgtcaggattactttacggcagcaaccgacactactgccatctccgtgga |
48593035 |
T |
|
| Q |
508 |
atggacaatatcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttact |
580 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48593036 |
atgggcaatatcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttact |
48593108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 48602234 - 48602564
Alignment:
| Q |
8 |
agcagaacctgtgagggctttggttcgcgaggtaacacaaatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaa |
107 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48602234 |
agcagaacaagttagggctttggttcgcgaggtaacacagatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaa |
48602333 |
T |
|
| Q |
108 |
ggttttaaaaagagggccttggacatacacaaaaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaagggaagccaagctaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48602334 |
ggttttaaaaagagggccttggacatacacaaaaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaagggaagccaagctaa |
48602433 |
T |
|
| Q |
208 |
tagatggtggtggtgagaatggtgaagaagagagactgaaagattttcttgacattttgctagatgtctacagtgagaaagaccgtgaagtcaactttac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48602434 |
tagatggtggtggtgagaatggtgaagaagagagactgaaagattttcttgacattttgctagatgtctacagtgagaaagaccgtgaagtcaactttac |
48602533 |
T |
|
| Q |
308 |
tagaaatcatatcaaatcattaatattggta |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
48602534 |
tagaaatcatatcaaatcattaatattggta |
48602564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 392 - 580
Target Start/End: Original strand, 48597531 - 48597719
Alignment:
| Q |
392 |
accctagtaagttataaaacattgttggattattgttattaaattatttcttcaaaaaataataaatgtcaggattactttacggcagcaaccgacacta |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48597531 |
accctagtaagttataaaacattgttggattattgttattaaattatttcttcaaaaaataataaatgtcaggattactttacggcagcaaccgacacta |
48597630 |
T |
|
| Q |
492 |
ctgccatctccgtggaatggacaatatcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttact |
580 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48597631 |
ctgccatctccgtggaatgggcaatatcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttact |
48597719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 377
Target Start/End: Original strand, 48597488 - 48597519
Alignment:
| Q |
346 |
aacttctcctcatactttttatgtaattataa |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
48597488 |
aacttctcctcatactttttatgtaattataa |
48597519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 358
Target Start/End: Complemental strand, 23231793 - 23231443
Alignment:
| Q |
8 |
agcagaacctgtgagggctttggttcgcgaggtaacacaaatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaa |
107 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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|
| T |
23231793 |
agcagaacaagttagggctttggttcgcgaggtaacacaaatttttggagaatttaatgtttcggattttataggatttttcaagaactttgacttgcaa |
23231694 |
T |
|
| Q |
108 |
ggttttaaaaagagggccttggacatacacaaaaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaagggaagccaagctaa |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23231693 |
ggttttaaaaaaagggccttggacatacacaagaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaagggaagccaagctaa |
23231594 |
T |
|
| Q |
208 |
tagatggtggtggtgagaatggtgaagaagagagactgaaagattttcttgacattttgctagatgtctacagtgagaaagaccgtgaagtcaactttac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| ||||| |
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|
| T |
23231593 |
tagatggtggtggtgagaatggtgaagaagagagactgaaagattttcttgacattttgcttaatgtctttgaggagaaagaccttgaagtcaattttac |
23231494 |
T |
|
| Q |
308 |
tagaaatcatatcaaatcattaatattggtatgtatataacttctcctcat |
358 |
Q |
| |
|
||||| ||||||||||||||| || |||||| |||| | ||||||||||| |
|
|
| T |
23231493 |
tagaagtcatatcaaatcattgatcttggtacatatacatcttctcctcat |
23231443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 460 - 567
Target Start/End: Complemental strand, 23231270 - 23231163
Alignment:
| Q |
460 |
tcaggattactttacggcagcaaccgacactactgccatctccgtggaatggacaatatcagaactgtttaacaatccaagggtgctgaaaaaagcacaa |
559 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||||||||| ||| |
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|
| T |
23231270 |
tcaggattacttcacagcagctaccgacactactgccatctcagtcgaatgggcaatatcagaactgtttaacaatccaagggtgttgaaaaaagctcaa |
23231171 |
T |
|
| Q |
560 |
gaggaggt |
567 |
Q |
| |
|
|||||||| |
|
|
| T |
23231170 |
gaggaggt |
23231163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 23224441 - 23224265
Alignment:
| Q |
27 |
ttggttcgcgaggtaacacaaatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaaggttttaaaaagagggcct |
126 |
Q |
| |
|
|||||||| || || || |||||||| || |||||||| |||| |||||||||||| ||| ||||||||| ||||| |||||| | ||||||||||| | |
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|
| T |
23224441 |
ttggttcgagatgtgacccaaattttcggggaatttaacatttcggattttataggattttgcaagaacttggactttcaaggtctcaaaaagagggcat |
23224342 |
T |
|
| Q |
127 |
tggacatacacaaaaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaagggaagccaag |
203 |
Q |
| |
|
|||| ||||| || |||||||||||||| |||| ||| | |||| ||||||||| ||| | ||||| |||||||| |
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|
| T |
23224341 |
tggatatacataagaggtatgatgcttttctggagaagttaatttgtgatcgtgaggaatcacgaaggaaagccaag |
23224265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 460 - 570
Target Start/End: Complemental strand, 23223525 - 23223415
Alignment:
| Q |
460 |
tcaggattactttacggcagcaaccgacactactgccatctccgtggaatggacaatatcagaactgtttaacaatccaagggtgctgaaaaaagcacaa |
559 |
Q |
| |
|
|||||||||||| || ||||| || || || |||||||| || |||||||||||||| |||||||||| |||||||||| || ||||| ||||||||| |
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|
| T |
23223525 |
tcaggattacttcacagcagctacagatacaactgccatttcattggaatggacaatagcagaactgttcaacaatccaatagtactgaagaaagcacaa |
23223426 |
T |
|
| Q |
560 |
gaggaggtgga |
570 |
Q |
| |
|
|| |||||||| |
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|
| T |
23223425 |
gaagaggtgga |
23223415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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