View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4167_low_20 (Length: 300)
Name: NF4167_low_20
Description: NF4167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4167_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 283
Target Start/End: Original strand, 39312967 - 39313237
Alignment:
| Q |
12 |
atcatcaacacatttaccatccagataagtcaatttagtcccacaacgagcaaggtggtgtcattataatctctgaatgtatcaacagtactgaaatatc |
111 |
Q |
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| T |
39312967 |
atcatcagcacatttaccatccagataagtcaatttagtcccacaacgagcaaggtggtgtcattataatctctgaatgtatcaacattactgaaatatc |
39313066 |
T |
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| Q |
112 |
cctaaatttatcttctgttagtaatttcgtgcacaaattgactaacgaaagacacacatgaggacgaaattaaccaacgaaaacaaaaacgaggaccaaa |
211 |
Q |
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| T |
39313067 |
cctaaatttatcttctgttagtaatttcgtgcacaaattgactaatggaagacacacatgaggacgaaattaaccaacgaaaacaaaaacgaggacc-aa |
39313165 |
T |
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| Q |
212 |
ctaactaacgaaagacacattcgggtatgcttttgtaatgttgatacattcatgttctgcggtgacaacgag |
283 |
Q |
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| T |
39313166 |
ctaactaacgaaagacacattcgggtatgattttgtaattttgatacattcaagttctgcggtgacaacgag |
39313237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 5553259 - 5553200
Alignment:
| Q |
204 |
ggaccaaactaactaacgaaagacacattcgggtatgcttttgtaatgttgatacattca |
263 |
Q |
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| T |
5553259 |
ggaccaaactgactaacaaaagacacatttgggtatctttttgtaattttaatacattca |
5553200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 10092546 - 10092592
Alignment:
| Q |
122 |
tcttctgttagtaatttcgtgcac-aaattgactaacgaaagacaca |
167 |
Q |
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| T |
10092546 |
tcttctgttagtaattttgtggaccaaattgactaacgaaagacaca |
10092592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 42298267 - 42298324
Alignment:
| Q |
201 |
cgaggaccaaactaactaacgaaagacacattcgggtatgcttttgtaatgttgatac |
258 |
Q |
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| T |
42298267 |
cgaggaccaaaatgattaacaaaagacacatttaggtatgcctttgtaatgttgatac |
42298324 |
T |
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