View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4167_low_23 (Length: 288)
Name: NF4167_low_23
Description: NF4167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4167_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 28438043 - 28437767
Alignment:
| Q |
1 |
tagcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatggatgatttgggtgcaacattcctcatgcaagtaaacaagacctcttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
28438043 |
tagcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatggatgatttgggtgcaacagtcctcatgcaagtaaataagacctcttgc |
28437944 |
T |
|
| Q |
101 |
aattccggtggcaatttgaactcgttggttccaatttggtttcaaaggagtgaaaaggaagcttgctaaagtaccattactcatcaattcatacacaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28437943 |
aattccggtggcaatttgaactcgttggttccaacttggtttcaaaggagtgaaaaggaagcttgctaaagtaccattactcatcaattcatacaccaaa |
28437844 |
T |
|
| Q |
201 |
atccggtgttgatcgtcactgcaatacccatgaagacgaacaagattcctatgatgagtttcgagtatcacattcat |
277 |
Q |
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| T |
28437843 |
atccggtgttgatcgtcactgcaatacccatgaagacgaacaagattcctatgatgagtttcgagtatcacattcat |
28437767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 3 - 261
Target Start/End: Complemental strand, 28488097 - 28487839
Alignment:
| Q |
3 |
gcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatggatgatttgggtgcaacattcctcatgcaagtaaacaagacctcttgcaa |
102 |
Q |
| |
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|||||||| | ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
28488097 |
gcattgtattgatcatctagaagtatattttgtggctttatatcacaatggatgatttgggtgcaacatccctcgtgcaagtaaacaagacctcttgcaa |
28487998 |
T |
|
| Q |
103 |
ttccggtggcaatttgaactcgttggttccaatttggtttcaaaggagtgaaaaggaagcttgctaaagtaccattactcatcaattcatacacaaaaat |
202 |
Q |
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|||| | ||| || ||||||||||||||||||||||| |||| ||||||||| ||||| |||||||| ||||||||||| || || || || ||||| |
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| T |
28487997 |
ttcccaggataatgtggactcgttggttccaatttggttttaaagaagtgaaaagaaagctcgctaaagttccattactcatgaactcgtataccaaaat |
28487898 |
T |
|
| Q |
203 |
ccggtgttgatcgtcactgcaatacccatgaagacgaacaagattcctatgatgagttt |
261 |
Q |
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||| ||||| | ||| |||| || ||| ||||||||||||||||||||||| |||||| |
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| T |
28487897 |
ccgatgttgtccctcattgcagtatccaagaagacgaacaagattcctatgaagagttt |
28487839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 3 - 254
Target Start/End: Complemental strand, 28466336 - 28466085
Alignment:
| Q |
3 |
gcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatggatgatttgggtgcaacattcctcatgcaagtaaacaagacctcttgcaa |
102 |
Q |
| |
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|||||||| | ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28466336 |
gcattgtattgatcatctagaagtatattttgtggctttatatcacaatggatgatttgggtgcaacatccctcatgcaagtaaacaagacctcttgcaa |
28466237 |
T |
|
| Q |
103 |
ttccggtggcaatttgaactcgttggttccaatttggtttcaaaggagtgaaaaggaagcttgctaaagtaccattactcatcaattcatacacaaaaat |
202 |
Q |
| |
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| || | ||| || |||||||||||||||| |||||| || || |||||||| ||||| |||||||||||||||||||| || || || || ||||| |
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| T |
28466236 |
tccccaggataatgtggactcgttggttccaatctggttttaatggggtgaaaagaaagctcgctaaagtaccattactcatgaactcgtataccaaaat |
28466137 |
T |
|
| Q |
203 |
ccggtgttgatcgtcactgcaatacccatgaagacgaacaagattcctatga |
254 |
Q |
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||| ||||| | ||| |||| || ||| ||||||||||||||||||||||| |
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|
| T |
28466136 |
ccgatgttgtccctcattgcagtatccaagaagacgaacaagattcctatga |
28466085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 3 - 261
Target Start/End: Complemental strand, 28445490 - 28445232
Alignment:
| Q |
3 |
gcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatggatgatttgggtgcaacattcctcatgcaagtaaacaagacctcttgcaa |
102 |
Q |
| |
|
|||||||| | ||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
28445490 |
gcattgtattgatcatctagaagtatattttgtggctttatatcgcaatggatgatttgggtgcaacacccctcgtgcaagtaaacaagacctcttgcaa |
28445391 |
T |
|
| Q |
103 |
ttccggtggcaatttgaactcgttggttccaatttggtttcaaaggagtgaaaaggaagcttgctaaagtaccattactcatcaattcatacacaaaaat |
202 |
Q |
| |
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| || | ||| || |||||||||||||||| |||||| || || |||||||| ||||| |||||||| ||||||||||| || ||||| | ||||| |
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| T |
28445390 |
tccccaggataatgtggactcgttggttccaatctggttttaatggggtgaaaagaaagctagctaaagtgccattactcattaactcatatgccaaaat |
28445291 |
T |
|
| Q |
203 |
ccggtgttgatcgtcactgcaatacccatgaagacgaacaagattcctatgatgagttt |
261 |
Q |
| |
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|| || || | || ||||||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
28445290 |
gcgatgctgtccttcgttgcaatatccaagaagacgaacaagattcctatgatgagttt |
28445232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 3056706 - 3056654
Alignment:
| Q |
3 |
gcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatggat |
55 |
Q |
| |
|
|||||| ||| |||||| || ||||||||||| |||||||||||||||||||| |
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|
| T |
3056706 |
gcattgaaataatcatccaggagtatgttttgaggctttatgtcacaatggat |
3056654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 3035827 - 3035783
Alignment:
| Q |
14 |
atcatctagaagtatgttttgtggctttatgtcacaatggatgat |
58 |
Q |
| |
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|||||| || ||||||||||| ||||||||||||||||| ||||| |
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| T |
3035827 |
atcatcaaggagtatgttttgaggctttatgtcacaatgaatgat |
3035783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 3070217 - 3070261
Alignment:
| Q |
14 |
atcatctagaagtatgttttgtggctttatgtcacaatggatgat |
58 |
Q |
| |
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|||||| || |||||||| || ||||||||||||||||||||||| |
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| T |
3070217 |
atcatcaaggagtatgttctgaggctttatgtcacaatggatgat |
3070261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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