View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4167_low_24 (Length: 271)
Name: NF4167_low_24
Description: NF4167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4167_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 28438130 - 28438383
Alignment:
| Q |
1 |
gcaccagattggtttaggagtgcaccaatcagcgctaaggttgatgtttacagttttggtgtcttgttacttgaaataatttgttgtagaaaaaatgtag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28438130 |
gcaccagattggtttaggagtgcaccaatcagcgctaaggttgatgtttacagttttggtgtcttgtttcttgaaataatttgttgtagaaaaaatgtag |
28438229 |
T |
|
| Q |
101 |
agcatgaaaatgcaagtgaagaaaagaggattttaactgattgggcatatgattgctacaaggctaataacttggaccttcttctagaaaatgaatgtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28438230 |
agcatgaaaatgcaagtgaagaaaagaggattttaactgattgggcatatgattgctacaaggctaataatttggaccttcttctagaaaatgaatgtga |
28438329 |
T |
|
| Q |
201 |
ggttgtcaatgaaattagtagagtggaaaaatttgtcatgattgctatttggtg |
254 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28438330 |
ggttgtcaatgaaatgagtagagtggaaaaatttgtcatgattgctatttggtg |
28438383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 28466425 - 28466678
Alignment:
| Q |
1 |
gcaccagattggtttaggagtgcaccaatcagcgctaaggttgatgtttacagttttggtgtcttgttacttgaaataatttgttgtagaaaaaatgtag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||| ||| ||||||||||| ||||| | || || ||||||||||| |||||||||| |
|
|
| T |
28466425 |
gcaccagattggtttaggagtgcaccaatcactgcaaaggttgatacttatagttttggtgtattgttgttagagatcatttgttgtaggaaaaatgtag |
28466524 |
T |
|
| Q |
101 |
agcatgaaaatgcaagtgaagaaaagaggattttaactgattgggcatatgattgctacaaggctaata-acttggaccttcttctagaaaatgaatgtg |
199 |
Q |
| |
|
|| | |||| | | ||||||| | ||||||||||||||||||| ||||||||||| ||| |||| | |||| ||| ||||||||||||||| || |
|
|
| T |
28466525 |
agaaagaaattttcactgaagaacaagggattttaactgattgggcttatgattgctataagactaaaagactt-gacggtcttctagaaaatgataatg |
28466623 |
T |
|
| Q |
200 |
aggttgtcaatgaaattagtagagtggaaaaatttgtcatgattgctatttggtg |
254 |
Q |
| |
|
||| || |||||| || | | ||||||| ||||| ||||||||||||||||| |
|
|
| T |
28466624 |
aggctggcaatgacatgatgtgcttggaaaagtttgtgatgattgctatttggtg |
28466678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 28488186 - 28488439
Alignment:
| Q |
1 |
gcaccagattggtttaggagtgcaccaatcagcgctaaggttgatgtttacagttttggtgtcttgttacttgaaataatttgttgtagaaaaaatgtag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||||| ||||| | ||||| ||||||||||| |||||||||| |
|
|
| T |
28488186 |
gcaccagattggtttaggagtgcaccaatcacttcaaaggttgatacttatagttttggtgtattgttgttagaaatcatttgttgtaggaaaaatgtag |
28488285 |
T |
|
| Q |
101 |
agcatgaaaatgcaagtgaagaaaagaggattttaactgattgggcatatgattgctacaaggctaata-acttggaccttcttctagaaaatgaatgtg |
199 |
Q |
| |
|
|| ||| | | ||||||||| ||||||||||||||||||| ||||||||||| ||| |||| | |||| ||| ||||||||||||||| || |
|
|
| T |
28488286 |
agagagaattttttactgaagaaaaagggattttaactgattgggcttatgattgctataagactaaaagactt-gacggtcttctagaaaatgataatg |
28488384 |
T |
|
| Q |
200 |
aggttgtcaatgaaattagtagagtggaaaaatttgtcatgattgctatttggtg |
254 |
Q |
| |
|
||| || |||||| || | | ||||||| ||||| ||||||||||||||||| |
|
|
| T |
28488385 |
aggctggcaatgacatgatgtgcttggaaaagtttgtgatgattgctatttggtg |
28488439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 28445579 - 28445745
Alignment:
| Q |
1 |
gcaccagattggtttaggagtgcaccaatcagcgctaaggttgatgtttacagttttggtgtcttgttacttgaaataatttgttgtagaaaaaatgtag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||| ||| ||||||||||| || || | || ||||| |||||||| ||||| |||| |
|
|
| T |
28445579 |
gcaccagattggtttaggagtgcaccaatcactgcaaaggttgatacttatagttttggtgtattattgttagagataatatgttgtaggaaaaacgtag |
28445678 |
T |
|
| Q |
101 |
agcatgaaaatgcaagtgaagaaaagaggattttaactgattgggcatatgattgctacaaggctaa |
167 |
Q |
| |
|
|| | ||| | | |||||||| ||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
28445679 |
agaaagaattttttaccgaagaaaaagggattttaactgattgggcttatgattgctacaagactaa |
28445745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University