View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4167_low_30 (Length: 244)

Name: NF4167_low_30
Description: NF4167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4167_low_30
NF4167_low_30
[»] chr2 (23 HSPs)
chr2 (1-230)||(9321757-9321986)
chr2 (1-157)||(10372648-10372804)
chr2 (54-230)||(9329418-9329598)
chr2 (1-164)||(9292694-9292857)
chr2 (6-211)||(8572675-8572879)
chr2 (1-211)||(9060271-9060484)
chr2 (6-209)||(9316793-9316999)
chr2 (6-164)||(10353916-10354074)
chr2 (47-164)||(10336623-10336740)
chr2 (52-164)||(10348620-10348732)
chr2 (55-164)||(12018134-12018243)
chr2 (51-164)||(7114865-7114978)
chr2 (47-164)||(9275335-9275452)
chr2 (47-164)||(9283394-9283511)
chr2 (47-164)||(12005385-12005502)
chr2 (6-131)||(14551091-14551215)
chr2 (54-153)||(9357935-9358034)
chr2 (55-164)||(12011813-12011922)
chr2 (55-164)||(7612716-7612825)
chr2 (55-134)||(9365415-9365494)
chr2 (102-161)||(8578748-8578807)
chr2 (59-164)||(11986745-11986850)
chr2 (64-164)||(17565334-17565434)
[»] scaffold0667 (1 HSPs)
scaffold0667 (37-164)||(5261-5388)
[»] chr3 (2 HSPs)
chr3 (1-164)||(37463288-37463451)
chr3 (90-164)||(39428733-39428807)
[»] chr4 (2 HSPs)
chr4 (4-164)||(26575648-26575808)
chr4 (47-131)||(561982-562066)
[»] chr8 (1 HSPs)
chr8 (33-164)||(41965942-41966073)
[»] chr1 (2 HSPs)
chr1 (22-149)||(29452586-29452713)
chr1 (6-149)||(29467060-29467203)
[»] chr5 (1 HSPs)
chr5 (56-164)||(36225571-36225679)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 9321757 - 9321986
Alignment:
Q  1 tggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9321757 tggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgagaatcgattatggatt 9321856  T
Q  101 taagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttcctccaacaattccggcggaggaacatcactcgccat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321857 taagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttcctccaacaattccggcggaggaacatcactcgccat 9321956  T
Q  201 tggaaggaaggttcgttctagggttctgtg 230  Q
    ||||||||||||||||||||||||| ||||    
T  9321957 tggaaggaaggttcgttctagggttgtgtg 9321986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 10372648 - 10372804
Alignment:
Q  1 tggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatt 100  Q
    |||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| ||| |||||||||||||| | ||| ||||||||||  ||||    
T  10372648 tggagttggtagagatcgaatttgcgttgaaggattaaggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaatgatt 10372747  T
Q  101 taagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggaga 157  Q
    ||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  10372748 taaatgattttgaagttgatcggaatcggagaagtgattttaccggtaagcgggaga 10372804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 54 - 230
Target Start/End: Original strand, 9329418 - 9329598
Alignment:
Q  54 atttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgg 153  Q
    ||||||||| ||||||||  |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  9329418 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 9329517  T
Q  154 gagaggatttcctccaacaattccggcggaggaacatcactcgccatt----ggaaggaaggttcgttctagggttctgtg 230  Q
    ||||||||||||   |||||||||||| || ||||||||| |||||||    |||||||||||||||||||||||| ||||    
T  9329518 gagaggatttccgttaacaattccggcagaagaacatcacccgccattggaaggaaggaaggttcgttctagggttgtgtg 9329598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 9292694 - 9292857
Alignment:
Q  1 tggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatt 100  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||  |||||||||||||||| ||||||||  |||||  ||| |||||||||| |||||    
T  9292694 tggagttggtagagatcgaatttgtgtcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatt 9292793  T
Q  101 taagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 164  Q
    |||||||||| ||| |||||||||||  ||||||||||||||| |||| |||||||| ||||||    
T  9292794 taagtgattttgaaattgatcggaatctgagaagtgattttactggtacgcgggagaagatttc 9292857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 8572879 - 8572675
Alignment:
Q  6 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagt 105  Q
    |||||||| |||| | ||| || ||||||||||||| ||| |||||||||||||||| ||||||||| |||||| ||| ||||||||||| |||||||||    
T  8572879 ttggtagatatcgtagttgcgtcgaatgattaaggaacgattgagggaatttttgaggtgaaggttggtgaagttgtgggaatcgattatagatttaagt 8572780  T
Q  106 gatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttcctccaacaattccggcggaggaacatcactcgccattggaa 205  Q
    ||||| ||||||||||||||| |||||||||| ||||| |||| |||||||| ||||||    |  | ||||| |||| ||||||||| |||||||||||    
T  8572779 gattttgaagttgatcggaatcggagaagtga-tttactggtatgcgggagaagatttcagtgactatttccgacggaagaacatcacccgccattggaa 8572681  T
Q  206 ggaagg 211  Q
    ||||||    
T  8572680 ggaagg 8572675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 9060484 - 9060271
Alignment:
Q  1 tggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatt---tttgagatgaaggttgatgaagtggtgcgaatcgattatgg 97  Q
    |||||||||||||||||| |||||||| ||| |||||   ||||| |||||| |||   |||||| | ||||||  |||||| ||| |||||||||| ||    
T  9060484 tggagttggtagagatcggatttgtgtcgaaggattataaatcgattgaggggattatttttgaggtaaaggttagtgaagttgtgagaatcgattaagg 9060385  T
Q  98 atttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttcctccaacaattccggcggaggaacatcactcgc 197  Q
    ||||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||| ||||||  | |  | |||||||||| ||||||||  |||    
T  9060384 atttaagtgattttgaagttgatcggaatcggagaagtgattgaaccggtaagcgggagaagatttcggcaagtatttccggcggaagaacatcagccgc 9060285  T
Q  198 cattggaaggaagg 211  Q
    ||||||||||||||    
T  9060284 cattggaaggaagg 9060271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 209
Target Start/End: Original strand, 9316793 - 9316999
Alignment:
Q  6 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatt---tttgagatgaaggttgatgaagtggtgcgaatcgattatggattta 102  Q
    ||||||||| ||| ||||||  |||| ||||||||||||| ||||||||||   |||||| |||||||||||||||| ||| ||||| ||||  ||||||    
T  9316793 ttggtagagttcggatttgtaatgaaggattaaggatcgattgagggaattatttttgaggtgaaggttgatgaagttgtgagaatctattaaagattta 9316892  T
Q  103 agtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttcctccaacaattccggcggaggaacatcactcgccattg 202  Q
    |||||||| ||||||||||||||| |||||||||||||||| |||||| |||||| ||||||  | |  | |||||||||| || | |||  ||||||||    
T  9316893 agtgattttgaagttgatcggaatcggagaagtgattttactggtaagtgggagaagatttcggcgagtatttccggcggaagaccgtcagccgccattg 9316992  T
Q  203 gaaggaa 209  Q
    |||||||    
T  9316993 gaaggaa 9316999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 164
Target Start/End: Original strand, 10353916 - 10354074
Alignment:
Q  6 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagt 105  Q
    |||||||| ||||||||||  | |||  ||||||||| || || |||||||| |||| |||||||||||||| | ||  |||||||||| |||||||| |    
T  10353916 ttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaat 10354015  T
Q  106 gatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 164  Q
    ||||| |||||||||||||||  |||||||||| |||||||||||||||| ||||||||    
T  10354016 gattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaaggatttc 10354074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 10336623 - 10336740
Alignment:
Q  47 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccgg 146  Q
    ||||||||||||  || |||||||||||||| | ||| |||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||||    
T  10336623 tgagggaattttgaaggtgaaggttgatgaatttgtgagaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccgg 10336722  T
Q  147 taagcgggagaggatttc 164  Q
    ||| ||||||| ||||||    
T  10336723 taaacgggagaagatttc 10336740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 10348620 - 10348732
Alignment:
Q  52 gaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagc 151  Q
    |||||||| || |||||||||||||| | | | |||||||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||||||||    
T  10348620 gaattttttaggtgaaggttgatgaatttgagggaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagc 10348719  T
Q  152 gggagaggatttc 164  Q
    |||||| ||||||    
T  10348720 gggagaagatttc 10348732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 12018243 - 12018134
Alignment:
Q  55 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcggg 154  Q
    |||||||| ||||| ||| |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| | |||||||||||||| ||||||||||    
T  12018243 tttttgagttgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcgaagaagtgattttactggtaagcggg 12018144  T
Q  155 agaggatttc 164  Q
    ||| ||||||    
T  12018143 agaagatttc 12018134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 7114978 - 7114865
Alignment:
Q  51 ggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaag 150  Q
    ||||||||| ||||||||||||||||| | ||| |||||||||| ||||||||||||||| ||||||||||||||| | |||||||||  ||| |||| |    
T  7114978 ggaatttttaagatgaaggttgatgaatttgtgggaatcgattaaggatttaagtgattttgaagttgatcggaatcgaagaagtgatcgtactggtagg 7114879  T
Q  151 cgggagaggatttc 164  Q
    || |||| ||||||    
T  7114878 cgagagaagatttc 7114865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 9275335 - 9275452
Alignment:
Q  47 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccgg 146  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| || |  |||||||||||||| ||  |||||||||||  ||||||||||| ||| ||    
T  9275335 tgagggaatttttgagatgaaggttgatgaagttgtgggaatcaatcaacgatttaagtgattttgagattgatcggaatcagagaagtgattgtactgg 9275434  T
Q  147 taagcgggagaggatttc 164  Q
    ||| ||||||| ||||||    
T  9275435 taaccgggagaagatttc 9275452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 9283511 - 9283394
Alignment:
Q  47 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccgg 146  Q
    |||||||| ||||||| |||||||||||||| | ||| ||||| |||| ||||  ||||||||||||||||||||||||| |||| |||||||| || ||    
T  9283511 tgagggaacttttgaggtgaaggttgatgaatttgtgagaatctattagggatcgaagtgatttagaagttgatcggaatcggagtagtgatttaactgg 9283412  T
Q  147 taagcgggagaggatttc 164  Q
    ||||| ||||| ||||||    
T  9283411 taagcaggagaagatttc 9283394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 12005502 - 12005385
Alignment:
Q  47 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccgg 146  Q
    |||| |||||||| |||||||||||| |||||| ||| |||||||||||||||||||| ||||  |||||||| |||||| |||||||||||| |   ||    
T  12005502 tgagagaattttttagatgaaggttggtgaagttgtgagaatcgattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggagg 12005403  T
Q  147 taagcgggagaggatttc 164  Q
    ||||||||||| ||||||    
T  12005402 taagcgggagaagatttc 12005385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 14551091 - 14551215
Alignment:
Q  6 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagt 105  Q
    ||||||||||| | | |||||| ||| ||||||||| | | ||||||||||||| || ||||| |||||||||| ||| |||||||||| ||||| ||||    
T  14551091 ttggtagagattggacttgtgtcgaaggattaaggaacaattgagggaattttt-aggtgaagtttgatgaagttgtgggaatcgattagggattgaagt 14551189  T
Q  106 gatttagaagttgatcggaattggag 131  Q
    ||||| ||||||||||||||||||||    
T  14551190 gattttgaagttgatcggaattggag 14551215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 153
Target Start/End: Original strand, 9357935 - 9358034
Alignment:
Q  54 atttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgg 153  Q
    ||||||||| |||||||| ||||||| ||| |||||||||| ||||||||||||||| ||||||||||  ||  |||||||||||||||| |||||||||    
T  9357935 atttttgaggtgaaggtttatgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 9358034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 12011922 - 12011813
Alignment:
Q  55 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcggg 154  Q
    |||||||| ||||| ||| |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| |||||||||||| |    |||||||||    
T  12011922 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcggagaagtgattgtggatgtaagcggg 12011823  T
Q  155 agaggatttc 164  Q
    ||| ||||||    
T  12011822 agaagatttc 12011813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 164
Target Start/End: Original strand, 7612716 - 7612825
Alignment:
Q  55 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcggg 154  Q
    |||||||| ||||||||  |||||| ||| ||||| |||| ||||||||| ||||||||| ||||||||||| |||| || | || |||||||||||| |    
T  7612716 tttttgaggtgaaggtttgtgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatcggaatcggaggagggtttgtaccggtaagcgag 7612815  T
Q  155 agaggatttc 164  Q
    ||||||||||    
T  7612816 agaggatttc 7612825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 9365415 - 9365494
Alignment:
Q  55 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaag 134  Q
    ||||||||||| |||||| |||||  ||| |||||||||||||||||||||||||| || |||||||||||| |||||||    
T  9365415 tttttgagatggaggttggtgaaggtgtgagaatcgattatggatttaagtgattttgaggttgatcggaatcggagaag 9365494  T

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Target: chr2; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 8578807 - 8578748
Alignment:
Q  102 aagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggat 161  Q
    ||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||    
T  8578807 aagtgatttagaaattgatcggaatcggagaagggattgtaccggtaagcgggagaggat 8578748  T

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Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 11986850 - 11986745
Alignment:
Q  59 tgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagag 158  Q
    |||| ||||| ||| |||||| ||| ||||| |||||||||||||| ||||  |||||||| |||||| |||||||||||| |    ||||||||||||     
T  11986850 tgaggtgaagattggtgaagttgtgagaatcaattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggatgtaagcgggagaa 11986751  T
Q  159 gatttc 164  Q
    ||||||    
T  11986750 gatttc 11986745  T

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Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 17565434 - 17565334
Alignment:
Q  64 tgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggattt 163  Q
    ||||||||| ||||||  || ||||| ||||   ||||||||||||| || |||||||||| | |||| || |||| ||| |||||||| ||||||||||    
T  17565434 tgaaggttggtgaagttatgggaatcaattaaaaatttaagtgatttcgacgttgatcggagtcggaggagggattgtactggtaagcgagagaggattt 17565335  T
Q  164 c 164  Q
    |    
T  17565334 c 17565334  T

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Target: scaffold0667 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 37 - 164
Target Start/End: Original strand, 5261 - 5388
Alignment:
Q  37 aaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtg 136  Q
    ||||||| | |||||||||||||| | |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  5261 aaggatctattgagggaatttttgcggtgaaggttgatgaagttgtgagaatcgattatggatttaagtgattttgaagttgatcggaatcggagaagtg 5360  T
Q  137 attttaccggtaagcgggagaggatttc 164  Q
    ||||||||||||||||||||| ||||||    
T  5361 attttaccggtaagcgggagaagatttc 5388  T

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Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 37463288 - 37463451
Alignment:
Q  1 tggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatt 100  Q
    ||||||||||||| |||| | |||| | ||||||||| |||| || |||||| |||||||||||||||||||||||||| ||| ||||||||||  ||||    
T  37463288 tggagttggtagatatcggagttgtttcgaatgattacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatt 37463387  T
Q  101 taagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 164  Q
    |||||||||| ||||||||||||||| |||||||||||| ||| ||||| ||||||||||||||    
T  37463388 taagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgggagaggatttc 37463451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 39428733 - 39428807
Alignment:
Q  90 gattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 164  Q
    ||||| |||||||| | |||| |||||||||||||||||||| || ||||  |||||||||||||||||||||||    
T  39428733 gattaaggatttaactcattttgaagttgatcggaattggaggagggattgcaccggtaagcgggagaggatttc 39428807  T

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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 26575648 - 26575808
Alignment:
Q  4 agttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaa 103  Q
    |||||||||| ||||||||||  | ||| ||||||||||||| || |||||||| |||| |||||||||||||| | ||  |||||||||| | ||||||    
T  26575648 agttggtagatatcgaatttgaatcgaaggattaaggatcgattgggggaatttctgaggtgaaggttgatgaatttgtaggaatcgattaagaatttaa 26575747  T
Q  104 gtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 164  Q
    ||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||| ||||||    
T  26575748 gtgattttgaagttgatcggaatcggagaagtgatattaccggtaaacgggagaagatttc 26575808  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 561982 - 562066
Alignment:
Q  47 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggag 131  Q
    ||||||| |||||||| ||||||||  |||||| ||| ||||||||||||||||||||  |||| ||| || |||||||| ||||    
T  561982 tgagggagtttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagccattttgaacttaatcggaatcggag 562066  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 41966073 - 41965942
Alignment:
Q  33 gattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggaga 132  Q
    ||||||||||||| ||||||| ||| |||| |||||||||||||||| ||| |||||||||| ||||  ||||||||| || |||||||||||| |||||    
T  41966073 gattaaggatcgattgagggattttctgaggtgaaggttgatgaagttgtgggaatcgattaaggatcgaagtgatttcgaggttgatcggaatcggaga 41965974  T
Q  133 agtgattttaccggtaagcgggagaggatttc 164  Q
    | |||||||||||||||  |||||| ||||||    
T  41965973 actgattttaccggtaatagggagaagatttc 41965942  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 29452713 - 29452586
Alignment:
Q  22 ttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatc 121  Q
    |||||| ||| ||||||||| ||| |||||||||||| ||| ||||| |||||||||| ||| |||||||||| ||||| ||||||||| || ||||| |    
T  29452713 ttgtgtcgaaggattaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaac 29452614  T
Q  122 ggaattggagaagtgattttaccggtaa 149  Q
    ||||| |||| || |||| |||||||||    
T  29452613 ggaatcggaggagggattgtaccggtaa 29452586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 29467203 - 29467060
Alignment:
Q  6 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagt 105  Q
    |||||||| |||| | |||||| ||| ||||||| | ||| |||||||||||  ||| ||||| |||||||||| ||| |||||||||| ||||| ||||    
T  29467203 ttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttcggaggtgaagtttgatgaagttgtgggaatcgattagggattgaagt 29467104  T
Q  106 gatttagaagttgatcggaattggagaagtgattttaccggtaa 149  Q
    ||||| || ||||| |||||| |||| || |||| |||||||||    
T  29467103 gattttgaggttgaacggaatcggaggagggattgtaccggtaa 29467060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 36225571 - 36225679
Alignment:
Q  56 ttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcggga 155  Q
    ||||||| ||||| ||  |||||| ||||||||||||||  |||||||||||||| ||||||||||||||| |||| || ||||  ||  ||||||||||    
T  36225571 ttttgaggtgaagattagtgaagttgtgcgaatcgattaacgatttaagtgattttgaagttgatcggaatcggaggagggattgcactagtaagcggga 36225670  T
Q  156 gaggatttc 164  Q
    |||||||||    
T  36225671 gaggatttc 36225679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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