View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4167_low_43 (Length: 207)
Name: NF4167_low_43
Description: NF4167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4167_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 190
Target Start/End: Original strand, 8530996 - 8531176
Alignment:
| Q |
10 |
ggtatattattctaccatttgaagctgcttcaaagaattttcatatcagatgcattgtggctgtaacagaatcaaatatggagtgccattggatttggtg |
109 |
Q |
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| T |
8530996 |
ggtatcttattctaccatttgaagctgctttaaagaattttcatatcagatgcattgtggctgtagcagaatcaaatatggagtgccattggatttggtg |
8531095 |
T |
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| Q |
110 |
gctatatgggtaacttggaggagctccatataaaattaaaatgatgctactgattgaagacttgtaattatatacacttgt |
190 |
Q |
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| T |
8531096 |
gctatatgggtaacttggaggagctccatataaaattaaaatgatgctactgtttgaagacttgtaattatatacacttgt |
8531176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 5155241 - 5155060
Alignment:
| Q |
10 |
ggtatattattctaccatttgaagctgcttcaaagaattttcatatcagatgcattgtggctgtaacagaatcaaatatggagtgccattggatttggtg |
109 |
Q |
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| T |
5155241 |
ggtatcttattctaccatttgaagttgcttgaaagaatttttataccagatgcactgtggctgtagcagaatcaaatatggagtgccattggatttggtg |
5155142 |
T |
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| Q |
110 |
gctatatgggtaacttggaggagctccatataaaattaaaatgatgctactgattgaagacttgtaattatatacacttgtg |
191 |
Q |
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| T |
5155141 |
gctatatgggtaacttggaggagctccatataaaattaaaatgatgctactgtctgaagacttgtaattatatacacttgtg |
5155060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 3384521 - 3384474
Alignment:
| Q |
136 |
catataaaattaaaatgatgctactgattgaagacttgtaattatata |
183 |
Q |
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| T |
3384521 |
catataaaattaaaatgatgctactgtttgaagacttgtaattatata |
3384474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 10 - 188
Target Start/End: Complemental strand, 19397703 - 19397530
Alignment:
| Q |
10 |
ggtatattattctaccatttgaagctgcttcaaagaattttcatatcagatgcattgtggctgtaacagaatcaaatatggagtgccattggatttggtg |
109 |
Q |
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| T |
19397703 |
ggtatcttattctaccatttgaagctgcttgaaagaattttcatatcagatgcattgtggctatagcagaatcaaatatggagtgtc-----atttggtg |
19397609 |
T |
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| Q |
110 |
gctatatgggtaacttggaggagctccatataaaattaaaatgatgctactgattgaagacttgtaattatatacactt |
188 |
Q |
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| T |
19397608 |
gctatatgggtaacctggagtagctccatataaatttaaaatgatgctactgtttgaagacttgtaattatatacactt |
19397530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 16003450 - 16003412
Alignment:
| Q |
19 |
ttctaccatttgaagctgcttcaaagaattttcatatca |
57 |
Q |
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| T |
16003450 |
ttctaccatttgaagctgcttgaaagaattttcacatca |
16003412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 26794688 - 26794648
Alignment:
| Q |
19 |
ttctaccatttgaagctgcttcaaagaattttcatatcaga |
59 |
Q |
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| T |
26794688 |
ttctaccatttgaagctgcttgtaagaattttcacatcaga |
26794648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 26305920 - 26305778
Alignment:
| Q |
34 |
ctgcttcaaagaattttcatatcagatgcattgtggctgtaacagaatcaaatatggagtgccattggatttggtggctatatgggtaacttggaggagc |
133 |
Q |
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| T |
26305920 |
ctgcttaaaagaattttcatatca-atgcattgtggccatagaagaatcaaatatggagtggcattgaatttggtggcaatatggataacctggaggatc |
26305822 |
T |
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| Q |
134 |
tccatataaaattaaaatgatgctactgattgaagacttgtaat |
177 |
Q |
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| T |
26305821 |
tccatataaaattaaaatgatgctactgtttgaagacttgtaat |
26305778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 40721661 - 40721628
Alignment:
| Q |
19 |
ttctaccatttgaagctgcttcaaagaattttca |
52 |
Q |
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| T |
40721661 |
ttctaccatttgaagctgcttgaaagaattttca |
40721628 |
T |
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