View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4167_low_6 (Length: 479)
Name: NF4167_low_6
Description: NF4167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4167_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 91; Significance: 7e-44; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 86 - 242
Target Start/End: Complemental strand, 9674527 - 9674370
Alignment:
| Q |
86 |
tttgtcataaaatactgaaacaa-taaactgaaa-cttaagaaatagatgaagatctatttgatattagaaatcaaaattcataatttaatcttaaaaaa |
183 |
Q |
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| T |
9674527 |
tttgtcataaaataccgaaacaaataaacaaaaaacttaagaaatatatgaagatctatttgatattagaaatgaatattcataatttaatctttaaaaa |
9674428 |
T |
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| Q |
184 |
tgttaacatttggctaaattatttctttttagatataggttttatgtataattaagaaa |
242 |
Q |
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| T |
9674427 |
tgttaacatttggctaaaatagttctttttagatatagg-tttatgtatatttatgaaa |
9674370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 9674834 - 9674767
Alignment:
| Q |
12 |
acagatggagtctgtccaatttgttgaattggagctttcatgtatgatgcactctttctagttcctta |
79 |
Q |
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| T |
9674834 |
acagatggagtctgtccaatttgttgaattggagcttttgtgtatgatgcactctttctagttcctta |
9674767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 9684042 - 9683965
Alignment:
| Q |
136 |
gatctatttgatattagaaatcaaaattcataatttaatcttaaaaaatgttaacatttggctaaattatttcttttt |
213 |
Q |
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| T |
9684042 |
gatctatttgatattagaaatgaaaattcacaattttatctttaaaaatgtcaataatatgctaaattagttcttttt |
9683965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 9690078 - 9690040
Alignment:
| Q |
136 |
gatctatttgatattagaaatcaaaattcataatttaat |
174 |
Q |
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| T |
9690078 |
gatctatttgatattagaaatgaaaattcataatttaat |
9690040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 9691968 - 9691906
Alignment:
| Q |
16 |
atggagtctgtccaatttgttgaattggagctttcatgtatgatgcactctttctagttcctt |
78 |
Q |
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| T |
9691968 |
atggagtctgatcaatttgtcgaactagagctttcatgtataatgtgctctttctagttcctt |
9691906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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