View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4167_low_8 (Length: 464)
Name: NF4167_low_8
Description: NF4167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4167_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Original strand, 35630723 - 35631164
Alignment:
| Q |
18 |
ggatcatagccaagaacatcatcgtcaacttcagcacttgccatagcagccctcattgcctcagttggctttgtcaccgtgtctgaccgaagatccacat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35630723 |
ggatcatagccaagaacatcatcgtcaacttcagcacttgccatagcagccctcattgcctcagttggctttgtcaccgtgtctgaccgaagatccacat |
35630822 |
T |
|
| Q |
118 |
ttctagttaccattttctctacaactacaacaaaccaaaaagtaaaaatcaatagccattacaagttcatcgcaatttcaaaattagattccccgcattc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35630823 |
ttctagttaccattttctctacaactacaacaaaccaaaaagtaaaaatcaatagccattacaagttcatcgcaatttcaaaattagattccccgcattc |
35630922 |
T |
|
| Q |
218 |
acacagttaagacatagatgatatagatgacagttccatcaaagattggacagtccaaattcatacttggtattttgaattataaaatatacttttttgg |
317 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35630923 |
acacagttaagacatggatgatatagatgacagttccatcaaagattggacagtccaaattcatacttggtattttgaattataaaatataattttttgg |
35631022 |
T |
|
| Q |
318 |
actgtctaatcttgatcaaatgttcaagaatgtcatgcatgaatgcgggaacccttgacgactgcataggatccaaattccaaattttcttctgtnnnnn |
417 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
35631023 |
actgtctaatcttgatcaaatgttcacgaatgtcctgcatgaatgcgggaacccttgacaactgcataggatccgaattccaaattttcttctgtaaaaa |
35631122 |
T |
|
| Q |
418 |
nnnnnnntgaaatcaccaattttagagtgacatgtctctgct |
459 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
35631123 |
gaaaaaatgaaatcaccaattttagagtgacatgtttctgct |
35631164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 47826474 - 47826356
Alignment:
| Q |
26 |
gccaagaacatcatcgtcaacttcagcacttgccatagcagccctcattgcctcagttggctttgtcaccgtgtctgaccgaagatccacatttctagtt |
125 |
Q |
| |
|
||||||||||||||| || || ||||| ||||||||||| | | ||||| ||||| || ||||| || || ||||||||||||||||| | |||||| |
|
|
| T |
47826474 |
gccaagaacatcatcatcgacctcagcgtttgccatagcaactcgcattgtttcagtcggttttgtgactgtatctgaccgaagatccactgtcctagtt |
47826375 |
T |
|
| Q |
126 |
accattttctctacaacta |
144 |
Q |
| |
|
|||||||| ||| |||||| |
|
|
| T |
47826374 |
accattttttctgcaacta |
47826356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University