View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4168_high_1 (Length: 756)

Name: NF4168_high_1
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4168_high_1
NF4168_high_1
[»] chr3 (2 HSPs)
chr3 (1-747)||(3809726-3810453)
chr3 (620-707)||(1329564-1329651)
[»] chr7 (2 HSPs)
chr7 (601-689)||(45489216-45489304)
chr7 (620-707)||(42539903-42539990)
[»] chr6 (1 HSPs)
chr6 (601-677)||(8187133-8187209)


Alignment Details
Target: chr3 (Bit Score: 665; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 1 - 747
Target Start/End: Original strand, 3809726 - 3810453
Alignment:
Q  1 aaaattcctaagacatcattgataaggctgcaaaagtccggagttatacgacgccattcaagtacacttaagccatatttaaaagaggaaaatatgattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3809726 aaaattcctaagacatcattgataaggctgcaaaagtccggagttatacgacgccattcaagtacacttaagccatatttaaaagaggaaaatatgattg 3809825  T
Q  101 ctcgtttaaggttttgtttgtcaatgctcgaccgtaacagctcgcctcatgatccgaagtttacttccatgcacaatactgtgtttatcgatgagaaatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3809826 ctcgtttaaggttttgtttgtcaatgctcgaccgtaacagctcgcctcatgatccgaagtttacttccatgcacaatactgtgtttatcgatgagaaatg 3809925  T
Q  201 gttctatattacaaaaaataaaaccaattactatttgcattcggaagaggaggagccacaccgagcatgtcaaagcaaaatttttattggtaagcttatg 300  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  3809926 gttctatattacaaaaaataaaaccaattactatttgaattcggaagaggaggagccacaccgaacatgtcaaagcaaaaattttattggtaagcttatg 3810025  T
Q  301 tttgtagctgcagtggccagacccaggtttgacaacgaaggaaaggagacattctcagggaagattggtatatttccatttgtgtatgaacagccagcta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3810026 tttgtagctgcagtggccagacccaggtttgacaacgaaggaaaggagacattctcagggaagattggtatatttccatttgtgtatgaacagccagcta 3810125  T
Q  401 gaagaagcagtgtcaacagagctgcagggactatagaaaggaaacctataacttctgtgacaagagaggtgaataaaactttcatgatgagcaaaatctt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3810126 gaagaagcagtgtcaacagagctgcagggactatagaaaggaaacctataacttctgtgacaagagaggtgaataaaactttcatgatgagcaaaatctt 3810225  T
Q  501 accagcccttaagaattgctggccaatagaagatgtagggaagacaattttcattcaacaagacaatgcaaagtctcatatttctaaagatgatcctgat 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3810226 accagcccttaagaattgctggccaatagaagatgtagggaagacaattttcattcaacaagagaatgcaaagtctcatatttctaaagatgatcctgat 3810325  T
Q  601 ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatg 700  Q
    |||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3810326 ttttgtcgagcagcaagtgaagatgggtttg-------------------acctccgaattcacccgatttgaatgtcttggacttgggctttttcaatg 3810406  T
Q  701 ccattcagtctttacagcagaaagaatcaatgaagtcaattgatgat 747  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  3810407 ccattcagtatttacagcagaaagaatcaatgaagtcaattgatgat 3810453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 707
Target Start/End: Original strand, 1329564 - 1329651
Alignment:
Q  620 aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca 707  Q
    |||||||||| ||||||||| |||| ||||||||||| ||||| || ||  | |||||||| ||| | ||||| |||| |||||||||    
T  1329564 aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca 1329651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 601 - 689
Target Start/End: Original strand, 45489216 - 45489304
Alignment:
Q  601 ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttggg 689  Q
    |||||| |||||||   ||||| ||||||||||||||||||||| |||||||| || || || |||||||||||||| ||||| |||||    
T  45489216 ttttgtagagcagcttctgaaggtgggtttgacattcgattgatatgtcaaccacctaactctcccgatttgaatgttttggatttggg 45489304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 707
Target Start/End: Complemental strand, 42539990 - 42539903
Alignment:
Q  620 aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca 707  Q
    |||||||||| ||||||||| |||| ||||||||||| ||||| || ||  | |||||||| ||| | ||||| |||| |||||||||    
T  42539990 aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca 42539903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 601 - 677
Target Start/End: Original strand, 8187133 - 8187209
Alignment:
Q  601 ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgt 677  Q
    |||||| |||||||   ||||| ||||||||||||||||||||| ||| |||  || ||||| ||||||||||||||    
T  8187133 ttttgtagagcagcttttgaaggtgggtttgacattcgattgatatgttaacgacctaattctcccgatttgaatgt 8187209  T

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