View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4168_high_12 (Length: 379)

Name: NF4168_high_12
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4168_high_12
NF4168_high_12
[»] chr4 (4 HSPs)
chr4 (1-212)||(51406791-51407002)
chr4 (50-212)||(50590357-50590519)
chr4 (46-137)||(8817659-8817750)
chr4 (335-370)||(51407125-51407160)
[»] chr5 (2 HSPs)
chr5 (46-211)||(33758549-33758714)
chr5 (50-210)||(9437168-9437328)
[»] chr7 (3 HSPs)
chr7 (50-180)||(15118002-15118132)
chr7 (111-171)||(10004340-10004400)
chr7 (81-180)||(10020292-10020390)
[»] chr3 (1 HSPs)
chr3 (100-178)||(51056053-51056131)
[»] chr2 (1 HSPs)
chr2 (81-164)||(7694620-7694705)
[»] chr6 (1 HSPs)
chr6 (81-170)||(27752354-27752444)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 51406791 - 51407002
Alignment:
Q  1 ctcaaaaattattcaatataacaatatcaatattatcgtaaagcatctatctaacttcttcaccgccaaacacttgcccatttcccttttcatccaaatt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  51406791 ctcaaaaattattcaacataacaatatcaatattatcgtaaagcatctatctaacttcttcaccgccaaacacttacccatttcccttttcatccaaatt 51406890  T
Q  101 ttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctttagccatccgcaccatcctttccagatctcctagaggtttccgcgtcggta 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  51406891 ttgtcgtcatcatgtagacatcagatggtggtggtgcgacggtcggctttagccatccgcaccatcctttccagatctcctggaggtttccgcgccggta 51406990  T
Q  201 gactgtggttgc 212  Q
    ||||||||||||    
T  51406991 gactgtggttgc 51407002  T

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Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 50 - 212
Target Start/End: Complemental strand, 50590519 - 50590357
Alignment:
Q  50 tctaacttcttcaccgccaaacacttgcccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctt 149  Q
    ||||| ||| |||||||||||||||  ||| | || |||||||||||| ||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  50590519 tctaatttcctcaccgccaaacactcacccctctctcttttcatccaatttttaccgtcatcatgtagacatcaggtggtggtggtgcgacggtcggctt 50590420  T
Q  150 tagccatccgcaccatcctttccagatctcctagaggtttccgcgtcggtagactgtggttgc 212  Q
    |||||||||||||||  ||||||||||||||  ||||||  ||||||||| ||||||||||||    
T  50590419 tagccatccgcaccacactttccagatctcccggaggttgtcgcgtcggtggactgtggttgc 50590357  T

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Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 8817750 - 8817659
Alignment:
Q  46 tctatctaacttcttcaccgccaaacacttgcccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgc 137  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8817750 tctatctaacttcttcaccgccaaacacttacccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgc 8817659  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 335 - 370
Target Start/End: Original strand, 51407125 - 51407160
Alignment:
Q  335 aagtctcgattttggtggtaaaaggaggtgatgatg 370  Q
    ||||||||||||||||||||| ||||||||||||||    
T  51407125 aagtctcgattttggtggtaagaggaggtgatgatg 51407160  T

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Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 46 - 211
Target Start/End: Complemental strand, 33758714 - 33758549
Alignment:
Q  46 tctatctaacttcttcaccgccaaacacttgcccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcg 145  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33758714 tctatctaacttctttaccgccaaacacttacccatttcccttttcatccaaattttgccgtcatcatgtagacatcagttggtggtggtgcgacggtcg 33758615  T
Q  146 gctttagccatccgcaccatcctttccagatctcctagaggtttccgcgtcggtagactgtggttg 211  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  33758614 gctttagccatccgcaccatcctttccagatctcccggaggtttccgcgccggtagactgtggttg 33758549  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 9437328 - 9437168
Alignment:
Q  50 tctaacttcttcaccgccaaacacttgcccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctt 149  Q
    ||||||||| |||||||||||||||| |   ||||||||||||| |||||||||   ||||| |||||||||||||||||||||||| ||||||||||||    
T  9437328 tctaacttcctcaccgccaaacacttactgctttcccttttcattcaaattttgcaatcatcgtgtagacatcagttggtggtggtgtgacggtcggctt 9437229  T
Q  150 tagccatccgcaccatcctttccagatctcctagaggtttccgcgtcggtagactgtggtt 210  Q
    ||||||||||||||| |||||| ||||||||   ||||| | || ||||| ||||||||||    
T  9437228 tagccatccgcaccaccctttctagatctcccgaaggttgctgcatcggtggactgtggtt 9437168  T

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Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 50 - 180
Target Start/End: Original strand, 15118002 - 15118132
Alignment:
Q  50 tctaacttcttcaccgccaaacacttgcccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctt 149  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||    
T  15118002 tctaacttcctcaccgccaaacacttacccctttcccttttcatccaaattttgtcgtcatcatgtagacatcacttggtggtggtgtgacggtcgggtt 15118101  T
Q  150 tagccatccgcaccatcctttccagatctcc 180  Q
    ||||||||||||||| |||||||||||||||    
T  15118102 tagccatccgcaccaccctttccagatctcc 15118132  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 10004400 - 10004340
Alignment:
Q  111 catgtagacatcagttggtggtggtgcgacggtcggctttagccatccgcaccatcctttc 171  Q
    |||||||||| |||||| |||||||||||||  ||||||||||||||| ||||| ||||||    
T  10004400 catgtagacaacagttgatggtggtgcgacgaacggctttagccatccacaccaccctttc 10004340  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 180
Target Start/End: Complemental strand, 10020390 - 10020292
Alignment:
Q  81 tttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctttagccatccgcaccatcctttccagatctcc 180  Q
    ||||| ||||||||||  ||||| | ||| |||||||||| |||||||||||||||| |  || | ||||||||||   ||||| |||||||||||||||    
T  10020390 tttccattttcatccagtttttgccttcaacatgtagacaacagttggtggtggtgc-aatgttgactttagccatttacaccaccctttccagatctcc 10020292  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 51056053 - 51056131
Alignment:
Q  100 tttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctttagccatccgcaccatcctttccagatct 178  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  51056053 tttggcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctttagccatccacaccaccctttccagatct 51056131  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 7694620 - 7694705
Alignment:
Q  81 tttcccttttcatccaaa--ttttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctttagccatccgcacca 164  Q
    ||||||||||||||||||  ||||| | ||| ||||||| || || | ||||||||||||||||||| ||||||||||||||||||    
T  7694620 tttcccttttcatccaaagtttttgccttcaacatgtagccaacattaggtggtggtgcgacggtcgactttagccatccgcacca 7694705  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 170
Target Start/End: Complemental strand, 27752444 - 27752354
Alignment:
Q  81 tttcccttttcatccaaatttt-gtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctttagccatccgcaccatccttt 170  Q
    ||||||||||||| |||||||| ||| |||  || ||||||  |||||||| ||||||||  |||||||||||||||| ||| || |||||    
T  27752444 tttcccttttcattcaaatttttgtcttcaatatttagacaaaagttggtgttggtgcgatagtcggctttagccatctgcatcacccttt 27752354  T

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