View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4168_high_29 (Length: 238)
Name: NF4168_high_29
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4168_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 35431573 - 35431351
Alignment:
| Q |
1 |
ttttgagatttttcttatattagtgaaaa-caataataacaaatattgtatttgtattttaaagtgtgccaattattccaagagacnnnnnnnnttgcag |
99 |
Q |
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|||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
35431573 |
ttttgaaaattttcttatattagtgaaaaacaataataacaaatattgtatttgtattttaaagtgtgccaattattctaagagacaaaaaaaattgcag |
35431474 |
T |
|
| Q |
100 |
aagctctgccaagagaggaagaatagtctgttaaacatatgttgcatacaattaattcnnnnnnngatctgtgcaaatatagatgtataccaaaaagacc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
35431473 |
aagctctgccaagagaggaagaatagtctgttaaacatatgttgcatacaattaattcaaaaaaagatcagtgcaaatatagatgtataccaaaaagacc |
35431374 |
T |
|
| Q |
200 |
ttaccttatccacagcttctttt |
222 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
35431373 |
ttaccttatccacagcttctttt |
35431351 |
T |
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