View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4168_high_4 (Length: 517)
Name: NF4168_high_4
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4168_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 12 - 496
Target Start/End: Original strand, 41551183 - 41551673
Alignment:
| Q |
12 |
cacagaaccatcataacgccctttttggtctaaacctttatgttttcacgcgaaccaatacaccatttttacactcttaggacaacaaactttgcactcc |
111 |
Q |
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| T |
41551183 |
cacagaaccatcataacgccctttttggtctaaacctttatgttttcacacgaaccaatacaccatttttacactcttaggacaacaaactttgcactcc |
41551282 |
T |
|
| Q |
112 |
atatactacggtagctacgcaaaacgtagtttgggttatgaccaatgcaagtgattaagctaccagaatttgtgaacaactt---gcaggcttgttttcc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41551283 |
atatactacggtagctacgcaaaacgtagtttgggttatgaccaatgcaagtgattaagctaccagaatttgtgaacaacttgcagcaggcttgttttcc |
41551382 |
T |
|
| Q |
209 |
aagcattgtatagttaaagccttcaaacttttaaaacccatgctaccatgattttgtgtacatagccgttttcaagagctaatgaatattctagattgtt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41551383 |
aagcattgtatagttaaagccttcaaacttttaaaacccatgctaccatgattttgtgtacatagccgttttcaagagctaatgaatattctagattgtt |
41551482 |
T |
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| Q |
309 |
ccctatttatgtccccatcaaaaagaattcaacannnnnnnnnaatttcattattaagagagctcatgataagaaaaatactaatcccctaataag---- |
404 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41551483 |
cccta-ttatgtccccatcaaaaagaattcaaca-ttttttttaatttcattattaagagagctcatgataagaaaaatactaatcccgtaataaggtat |
41551580 |
T |
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| Q |
405 |
-gtattgactgcagaactgacttgatgagaatctctctaccaacttgagaaagacattgattgcctcaagaaataaaagtaatccaattaata |
496 |
Q |
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| T |
41551581 |
tgtattgactgcagaactgacttgatgagaatctctctaccaacttgagaaagacattgattgcctcaagaaataaaagtaatccaattaata |
41551673 |
T |
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