View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4168_high_7 (Length: 457)
Name: NF4168_high_7
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4168_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 5836361 - 5836803
Alignment:
| Q |
1 |
gcttttttgaggaacaccataatgatcttgt---tgttgttgttgactatactcatcatgatgatgagtattattggtattgaaagtgttttcatcacca |
97 |
Q |
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| T |
5836361 |
gcttttttgaggaacaccataatgatcttgttgttgttgttgttgactatactcatcatgatgatgagtattattggtagtgaaagtgttttcatcacca |
5836460 |
T |
|
| Q |
98 |
ccacaagaattacaatcaacaaggtccaaatactcatcaacttctccactaaacaaatatccattattagccacttgattatgatcattgctaatgttgt |
197 |
Q |
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| T |
5836461 |
ccacaagaattacaatcaacaaggtccaaatactcatcaacttctccactaaacaaatatccattattagccacttgattatgatcattgctaatgttgt |
5836560 |
T |
|
| Q |
198 |
tgttactattgttattgttgttctttagaggattcaacaaaagccatgaagctgcttcattttcatcttccatatcatgatcaacaccttcatcctcctc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5836561 |
tgttactattgttattgttgttctttagaggattcaacaaaagccatgaagctgcttcattttcatcttccatatcatgatcaacaccttcatcctcctc |
5836660 |
T |
|
| Q |
298 |
ttcctccacctcacagccaccgcggacgaagccttcattatcggcacctaaaagggtggccggaggaccgtataggtaaccggaaattggaagaatcggg |
397 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5836661 |
ttcctccacctcacaaccaccgcggacgaagccttcatcttcggcacctaaaagggtggccggaggaccgtataggtaaccggaaattggaagaatcggg |
5836760 |
T |
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| Q |
398 |
acacgttggtggcggcttgcaagagggttagcagagtggatat |
440 |
Q |
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| T |
5836761 |
acacgttggtggcggcttgcaagagggttagcagagtggatat |
5836803 |
T |
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