View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4168_low_10 (Length: 403)
Name: NF4168_low_10
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4168_low_10 |
 | |
|
| [»] scaffold1194 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 16590712 - 16590318
Alignment:
| Q |
1 |
gaggagcatatgagagagccattgttggagaagaagcaatactatgaggattgtcctggttgcaaggttgaacaagaaaatgagcttaatgaaggagtat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16590712 |
gaggagcatatgagagagccattgttggagaagaagcaatactatgaagattgtcctggttgcaaggttgaacaagaaaatgagcttaatgaaggagtat |
16590613 |
T |
|
| Q |
101 |
ccataataaagcttttgattatatggatggtggttttatcagctagtaatcattattcaacttcttgttattannnnnnncacttgtagaataattgttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
16590612 |
ccataataaagcttttgattatatggatggtggttttatcagcaagtaagcattattcaacttcttcttattatttttttcacttgtagaataattgttc |
16590513 |
T |
|
| Q |
201 |
tttgatactttttgtttatatgtgattcttgtgagtacacactacacaattttgttgatgctactgttctaagttcttagtacggtttgaaaatcttgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16590512 |
tttgatactttttgtttatatgtgattcttgtgagtacacactacacagttttgttgatgctactattctaagttcttagtacggtttgaaaatcttgtt |
16590413 |
T |
|
| Q |
301 |
ttcttaatttgttgtgtcacggggatttccttttgaataagtcatgttaggataatttaacttattgctatgtcctatgtacctttgttcatctc |
395 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16590412 |
ttcttaatttgttgtgtcacggggattttcttttgaataagtcatgttaggataatttaacttattgctatgtcctatgtacctttgttcttctc |
16590318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 16530723 - 16530572
Alignment:
| Q |
15 |
agagccattgttggagaagaagcaatactatgaggattgtcctggttgcaaggttgaacaagaaaatgagcttaatgaaggagtatccataataaagctt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| || ||||||||| |||| ||||||| ||||| ||| |
|
|
| T |
16530723 |
agagccattgttggagaagaagcaatactatgaggattgtcctggttgtaaagtggaacaaactaaagagcttaatcaagggctatccatgataaatctt |
16530624 |
T |
|
| Q |
115 |
ttgattatatggatggtggttttatcagctagtaatcattattcaacttctt |
166 |
Q |
| |
|
||||||| |||||| | |||||||| |||||||| |||||||||||||||| |
|
|
| T |
16530623 |
gtgattatttggatgattgttttatctgctagtaagcattattcaacttctt |
16530572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 16522483 - 16522360
Alignment:
| Q |
8 |
atatgagagagccattgttggagaagaagcaatactatgaggattgtcctggttgcaaggttgaacaagaaaatgagcttaatgaaggagtatccataat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| || |||||||| | || |||||||| | |
|
|
| T |
16522483 |
atatgagagagccattgttggagaagaagcaatactataaggattgtcctggttgtaaggttgaacaagccaaagagcttaacaagggggtatccattac |
16522384 |
T |
|
| Q |
108 |
aaagcttttgattatatggatggt |
131 |
Q |
| |
|
||| |||||| | ||||||||||| |
|
|
| T |
16522383 |
aaatcttttggtcatatggatggt |
16522360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1194 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold1194
Description:
Target: scaffold1194; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 1441 - 1302
Alignment:
| Q |
15 |
agagccattgttggagaagaagcaatactatgaggattgtcctggttgcaaggttgaacaagaaaatgagcttaatgaaggagtatccataataaagctt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| || || |||||| || ||||||||| |||| ||||||||||||| ||| |
|
|
| T |
1441 |
agagccattgttggagaagaagcaatactatgaagattgtcctggttgtaaagtggaacaaactaaagagcttaatcaagggctatccataataaatctt |
1342 |
T |
|
| Q |
115 |
ttgattatatggatggtggttttatcagctagtaatcatt |
154 |
Q |
| |
|
||||||| |||||||| || ||||| ||| |||| |||| |
|
|
| T |
1341 |
gtgattatttggatggttgtgttatctgctggtaagcatt |
1302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University