View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4168_low_12 (Length: 394)
Name: NF4168_low_12
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4168_low_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 7 - 394
Target Start/End: Complemental strand, 34219263 - 34218878
Alignment:
| Q |
7 |
ggagtagcaaaggcatgaagagaagtgtagatgaggtgtgtagggatgttgcttggggagaaagtagagagcttggaagaataggattagctttgcagga |
106 |
Q |
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| T |
34219263 |
ggagtagcaagggcatgaagagaagtgtagatgaggtgtgtagggatgttgcttggggagaaaatagagagcttggaagaataggattagctttgcagga |
34219164 |
T |
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| Q |
107 |
ttgtatatgcagggatttaattgaagagattgttagagaattaggatgctcgaatactttgccatttgagtcctgtaagagaagactatgcttctgaact |
206 |
Q |
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| T |
34219163 |
ttgtatatgcagggatttaattgaagagattgttagagaattaggatgctcaaatactttgccatttgagtcctgtaagagaagactatgcttctgaact |
34219064 |
T |
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| Q |
207 |
atataacattattttgttcctttttgcttgattgttgnnnnnnnnataaatttatatagtgtatgttatctaacaaattacattggatttagctgcaggt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34219063 |
atataacattattttgttcctttttgcttgattgttg--ttttttataaatttatatagtgtatgttatctaacaaattacattggatttagctgcaggt |
34218966 |
T |
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| Q |
307 |
tattgttcaacataatgtacaatcaatttatttatttactcacaaaatactatatagattgacatatttttagaacacttgctcgacc |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34218965 |
tattgttcaacataatgtacaatcaatttatttatttactcacaaaatactatatagattgacatatttttagaacacttgctcgacc |
34218878 |
T |
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