View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4168_low_18 (Length: 331)

Name: NF4168_low_18
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4168_low_18
NF4168_low_18
[»] chr6 (2 HSPs)
chr6 (18-321)||(2328344-2328644)
chr6 (18-108)||(14264904-14264994)
[»] chr7 (2 HSPs)
chr7 (18-108)||(20603028-20603118)
chr7 (18-107)||(20622017-20622106)
[»] chr5 (2 HSPs)
chr5 (18-98)||(25834798-25834878)
chr5 (20-110)||(41349472-41349562)
[»] chr4 (1 HSPs)
chr4 (18-114)||(17183092-17183188)
[»] chr3 (1 HSPs)
chr3 (20-111)||(25794181-25794272)


Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 2328644 - 2328344
Alignment:
Q  18 cattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaactatgtaatnn 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||      
T  2328644 cattcttgaatagcagcttcccttgacataccatattgcttcatatagcaatccagcaatgagcaaacatgtcctcttttacgttcaaactatgtaataa 2328545  T
Q  118 nnnnnnnnnnnntcaatgcaacaatttctattgtgtaaaaaacttacattagagagaaataaagcttaaattttctatatatctagatatagatgtgata 217  Q
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2328544 aaaaaaaaa---tcaatgcaacaatttctattgtgtaaaaaacttacattagagagaaataaagcttaaattttctatatatctagatatagatgtgata 2328448  T
Q  218 tataaatacctcactggtcacaatttcatccattagtctacaaatagtagaaattgcatcaacaatttttggccaattagatacccacttgaaaatgttc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2328447 tataaatacctcactggtcacaatttcatccattagtctacaaatagtagaaattgcatcaacaatttttggccaattagatacccacttgaaaatgttc 2328348  T
Q  318 tctg 321  Q
    ||||    
T  2328347 tctg 2328344  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 14264904 - 14264994
Alignment:
Q  18 cattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaact 108  Q
    ||||||||||||||||||||||||| |||||||||||| || ||||||||||| | ||||||||||||||||||||||||| |||||||||    
T  14264904 cattcttgaatagcagcttccctagtcataccatattgttttatatagcaatccaacaatgagcaaacatgtcctcttttatgttcaaact 14264994  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 20603028 - 20603118
Alignment:
Q  18 cattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaact 108  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||| ||||||| ||||||||||||||||||||||||  |||||||||    
T  20603028 cattcttgaatagcagcttctctagacatatcaaattgcttcatataacaatctaacaatgagcaaacatgtcctcttttctgttcaaact 20603118  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 20622017 - 20622106
Alignment:
Q  18 cattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaac 107  Q
    |||||||||||||||||||| || |||||| || ||||||||||||| ||||||| |||||||||||| || ||||||||  ||||||||    
T  20622017 cattcttgaatagcagcttctctcgacatatcaaattgcttcatataacaatctaacaatgagcaaacttgccctcttttctgttcaaac 20622106  T

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Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 25834878 - 25834798
Alignment:
Q  18 cattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctctttta 98  Q
    |||||||||||||||||||||||||||||| |||| |||||||| |||||||| | |||||||||||||||| ||||||||    
T  25834878 cattcttgaatagcagcttccctagacatatcatactgcttcatgtagcaatccaacaatgagcaaacatgttctctttta 25834798  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 41349472 - 41349562
Alignment:
Q  20 ttcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaactat 110  Q
    ||||||||| ||| |||| ||||| |||  ||||||| |||||||||| || |  |||||| |||||||| |||||||  |||||||||||    
T  41349472 ttcttgaatggcaacttctctagagatattatattgcctcatatagcattccaagaatgaggaaacatgttctcttttttgttcaaactat 41349562  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 17183188 - 17183092
Alignment:
Q  18 cattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaactatgtaa 114  Q
    ||||||||||||| |||||| ||||| |||   |||| |||||||||||| || |  |||||| ||||||||||||||||| ||||||||| |||||    
T  17183188 cattcttgaatagaagcttctctagatatattgtattccttcatatagcattccaagaatgaggaaacatgtcctcttttatgttcaaactgtgtaa 17183092  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 25794272 - 25794181
Alignment:
Q  20 ttcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaactatg 111  Q
    ||||||||| |||||||||||||||| | ||||||  |||||||| || || || |||||| |||||||| |||||||  ||||||||||||    
T  25794272 ttcttgaatggcagcttccctagacacatcatattctttcatataacactccaggaatgaggaaacatgttctcttttttgttcaaactatg 25794181  T

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