View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4168_low_2 (Length: 723)

Name: NF4168_low_2
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4168_low_2
NF4168_low_2
[»] chr8 (13 HSPs)
chr8 (18-715)||(479665-480359)
chr8 (53-309)||(467687-467943)
chr8 (53-317)||(474712-474977)
chr8 (387-524)||(467492-467629)
chr8 (148-309)||(446677-446835)
chr8 (393-502)||(446508-446617)
chr8 (407-524)||(474520-474637)
chr8 (220-307)||(455405-455492)
chr8 (594-686)||(466743-466835)
chr8 (390-524)||(455212-455346)
chr8 (601-681)||(455041-455121)
chr8 (638-682)||(474232-474276)
chr8 (587-686)||(446009-446108)
[»] chr2 (3 HSPs)
chr2 (53-303)||(27491400-27491647)
chr2 (386-521)||(27491737-27491872)
chr2 (596-681)||(27493536-27493624)


Alignment Details
Target: chr8 (Bit Score: 676; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 676; E-Value: 0
Query Start/End: Original strand, 18 - 715
Target Start/End: Complemental strand, 480359 - 479665
Alignment:
Q  18 atatgatatgtgttttgatattgaaataacatactatacctgcaaaatgagccaaattgaccaagcaacacagtttcctaaaagacaaagacatccaagc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  480359 atatgatatgtgttttgatattgaaataacatactatacctgcaaaatgagccaaattgaccaagcaacacagtttcctaaaagacaaagacatccaagc 480260  T
Q  118 aaccaattctcatcattactagagagtcttgccatgattgactttgaagttatgttctctgcatttattagtagctttggacccttcaacaatgcaatag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  480259 aaccaattctcatcattactagagagtcttgccatgattgactttgaagttatgttctctgcatttattagtagctttggacccttcaacaatgcaatag 480160  T
Q  218 atactgctccacttatacatatcactgtccccactattttggctatagttctcatacttcgaatatttactttctccattctgtaatataatagtattca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  480159 atactgctccacttatacatatcactgtccccactattttggctatagttctcatacttcgaatatttactttctccattctgtaatataatagtattca 480060  T
Q  318 acttccaataattaaaaacacattcgtttaaattttgattgaataacaaattaattaatatgttcactttagtaattaccctacaaaggctgctattaca 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||    
T  480059 acttccaataattaaaaacacattcgtttaaattttgattgaataacaaatta---aatattttcactttagtaattaccctacaaaggctgctattaca 479963  T
Q  418 aatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccctcaaaaaataaattttgattcaatgtaatgctgc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479962 aatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccctcaaaaaataaattttgattcaatgtaatgctgc 479863  T
Q  518 aacatatatagagccatgataacacaaatcaatctcacgtacatgagtgtaaatatgcgtttatattattattactagagaatggaaactaacccaatta 617  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479862 aacatatatagagccatgataacacaaatcaatctcaggtacatgagtgtaaatatgcgtttatattattattactagagaatggaaactaacccaatta 479763  T
Q  618 gtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcctatcaagaaacaaaagaaatattatttttaattaa 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479762 gtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcctatcaagaaacaaaagaaatattatttttaattaa 479665  T

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Target: chr8; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 53 - 309
Target Start/End: Complemental strand, 467943 - 467687
Alignment:
Q  53 atacctgcaaaatgagccaaattgaccaagcaacacagtttcctaaaagacaaagacatccaagcaaccaattctcatca-ttactagagag--tcttgc 149  Q
    ||||||||||||||||  |||||  ||||||||||  |  ||| | |||| | ||||||||||||||||||||||||||| || |||   ||  | | ||    
T  467943 atacctgcaaaatgagaaaaattccccaagcaacagtgcatccgagaagagacagacatccaagcaaccaattctcatcacttcctaataaggttgtggc 467844  T
Q  150 catgattgactttgaagttatgttctctgcatttattagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtcccc 249  Q
    ||||||||| ||||||  ||| || |||||||||| ||||   ||||||||||||||||||||||| || ||||||||||||| |||||| | |||||||    
T  467843 catgattgattttgaaagtatcttatctgcatttagtagt---tttggacccttcaacaatgcaattgacactgctccacttacacatataattgtcccc 467747  T
Q  250 actattttggctatagttctcatacttcgaatatttactttctccattctgtaatataat 309  Q
    |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||    
T  467746 actattttggctatagttcttatacttcgaatattcactttttccattctgtaatataat 467687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 53 - 317
Target Start/End: Complemental strand, 474977 - 474712
Alignment:
Q  53 atacctgcaaaatgagccaaattgaccaagcaacacagtttcctaaaagacaaagacatccaagcaaccaattctcatcattactagagagtcttgccat 152  Q
    ||||||||||||||||||||| |||||| |||||||   |||| |||||| | | |||||||||||||||| | |||||| |||  |||  | | |||||    
T  474977 atacctgcaaaatgagccaaagtgaccaggcaacactacttcccaaaagatacacacatccaagcaaccaactatcatcactaccggaggttatggccat 474878  T
Q  153 gattgactttgaagtta---tgttctctgcatttattagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtcccc 249  Q
    ||| || |||| || ||   |||| ||||||||||   ||||||||||||||||||||||||| ||||| | ||||||||  | |||||| | ||||||     
T  474877 gatagattttgtaggtagtatgttttctgcattta---gtagctttggacccttcaacaatgctatagacaatgctccacaaacacatattaatgtccct 474781  T
Q  250 actattttggctatagttctcatacttcgaatatttactttctccattctgtaatata-atagtattca 317  Q
    |||||||||||||||||||||| ||||||||| || |||||||||||||||||||||| ||||||||||    
T  474780 actattttggctatagttctcaaacttcgaatgttgactttctccattctgtaatatatatagtattca 474712  T

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Target: chr8; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 387 - 524
Target Start/End: Complemental strand, 467629 - 467492
Alignment:
Q  387 tagtaattaccctacaaaggctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccctca 486  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||| ||| ||||| ||||||||||||||||||| |||||  ||| ||| |||||||    
T  467629 tagtaattaccctactaaggctgcaattacaaatgtgactgccggaagaagattggaaatggcacttgcaactgaagaagaagaaagatatagaccctca 467530  T
Q  487 aaaaataaattttgattcaatgtaatgctgcaacatat 524  Q
    ||| ||||||||||||||||||||||||||||| ||||    
T  467529 aaatataaattttgattcaatgtaatgctgcaatatat 467492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 148 - 309
Target Start/End: Complemental strand, 446835 - 446677
Alignment:
Q  148 gccatgattgactttgaagttatgttctctgcatttattagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtcc 247  Q
    ||||||||||| ||||||| ||| || ||||||||||  |||   ||||||||||| |||||||| || || | ||||||||  | |||||| | ||| |    
T  446835 gccatgattgattttgaagatatattttctgcatttaaaagt---tttggaccctttaacaatgcgatggacattgctccacaaacacatattattgttc 446739  T
Q  248 ccactattttggctatagttctcatacttcgaatatttactttctccattctgtaatataat 309  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  446738 ccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaatataat 446677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 393 - 502
Target Start/End: Complemental strand, 446617 - 446508
Alignment:
Q  393 ttaccctacaaaggctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccctcaaaaaat 492  Q
    ||||||| |||||||||||||||||||||||| |||||||| ||| |||  |||||||||||||| ||||||||||| |||| ||| |||||||||| ||    
T  446617 ttaccctgcaaaggctgctattacaaatgtgattgctggaataagattgttcatggcacttgcaattgaagcagaagatagatatagaccctcaaaatat 446518  T
Q  493 aaattttgat 502  Q
    ||||||||||    
T  446517 aaattttgat 446508  T

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Target: chr8; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 407 - 524
Target Start/End: Complemental strand, 474637 - 474520
Alignment:
Q  407 ctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccctcaaaaaataaattttgattcaa 506  Q
    ||||||| |||||||||||||| |||| ||| |||| |||||||||||||| ||||| ||||| |||| ||| |||||||||| ||| ||||||| ||||    
T  474637 ctgctataacaaatgtgactgcaggaataagattggtcatggcacttgcaattgaagaagaagatagatatagaccctcaaaatatagattttgagtcaa 474538  T
Q  507 tgtaatgctgcaacatat 524  Q
    ||||| |||||| |||||    
T  474537 tgtaacgctgcatcatat 474520  T

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Target: chr8; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 220 - 307
Target Start/End: Complemental strand, 455492 - 455405
Alignment:
Q  220 actgctccacttatacatatcactgtccccactattttggctatagttctcatacttcgaatatttactttctccattctgtaatata 307  Q
    ||||||||| | | |||||||| |||||| |||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  455492 actgctccagtaacacatatcattgtcccaactattttggctatagttctcaaactttgaatattcactttctccattctgtaatata 455405  T

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Target: chr8; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 594 - 686
Target Start/End: Complemental strand, 466835 - 466743
Alignment:
Q  594 agagaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcctatcaa 686  Q
    ||||||||||||| ||||||||||||||||| | ||| | ||| ||||||||||||||||| |||||||| |||||||| |||||||| ||||    
T  466835 agagaatggaaacaaacccaattagtgaggtcatgaaaatcaaggaaaaactccttaaattcaaggaatatgagccagagtttctcctgtcaa 466743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 390 - 524
Target Start/End: Complemental strand, 455346 - 455212
Alignment:
Q  390 taattaccctacaaaggctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccctcaaaa 489  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||  ||| |||  ||||||| |||||  ||||| ||| | |||| ||| ||||||||||    
T  455346 taattacccaacaaaggttgctataacaaatgtgactgctggagtaagattgatcatggcagttgcagttgaagaagatgatagatatagaccctcaaaa 455247  T
Q  490 aataaattttgattcaatgtaatgctgcaacatat 524  Q
     ||||||||||||  || |||||||||||| ||||    
T  455246 tataaattttgatataaagtaatgctgcaaaatat 455212  T

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Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 601 - 681
Target Start/End: Complemental strand, 455121 - 455041
Alignment:
Q  601 ggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcct 681  Q
    |||||| ||||||||||||||||| | ||| | | | ||||||||  ||||||||||||||||||||| ||| ||||||||    
T  455121 ggaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtttctcct 455041  T

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Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 682
Target Start/End: Complemental strand, 474276 - 474232
Alignment:
Q  638 gaaaaactccttaaatttaaggaataagagccagaatttctccta 682  Q
    |||||||||||||||||||||||||||||| |||| |||||||||    
T  474276 gaaaaactccttaaatttaaggaataagaggcagagtttctccta 474232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 587 - 686
Target Start/End: Complemental strand, 446108 - 446009
Alignment:
Q  587 tattactagagaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcctatcaa 686  Q
    |||||||||| |||| |||| |||| ||||||||| || | ||||| | | |||||||||||||| |||||||| || ||| |||| |||||||| ||||    
T  446108 tattactagaaaatgaaaacaaacctaattagtgaagtcatgaatatccaggaaaaactccttaagtttaaggagtaggaggcagagtttctcctgtcaa 446009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 53 - 303
Target Start/End: Original strand, 27491400 - 27491647
Alignment:
Q  53 atacctgcaaaatgagccaaattgaccaagcaacacagtttcctaaaagacaaagacatccaagcaaccaattctcatca-ttactagagagtcttgcca 151  Q
    ||||||||||||| ||||||| |||||| ||||||||| |||| ||||||   | ||||||||||||||||||||||||| || ||| || ||  |||||    
T  27491400 atacctgcaaaataagccaaactgaccaggcaacacagcttccaaaaagaaccaaacatccaagcaaccaattctcatcacttccta-ag-gttgtgcca 27491497  T
Q  152 -tgattgactttgaagttatgttctctgcatttattagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtcccca 250  Q
     ||||||| |||||||||||| | ||||||||||   | ||||||||||||||||| | ||||||  | ||||||||||||| || ||| | ||| || |    
T  27491498 atgattgattttgaagttatgctttctgcattta---gcagctttggacccttcaatagtgcaatgaacactgctccacttacacctataattgttccta 27491594  T
Q  251 ctattttggctatagttctcatacttcgaatatttactttctccattctgtaa 303  Q
     |||||||||||||||||||| ||||| |||||| |||| |||||||||||||    
T  27491595 ttattttggctatagttctcaaacttctaatattcacttgctccattctgtaa 27491647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 386 - 521
Target Start/End: Original strand, 27491737 - 27491872
Alignment:
Q  386 ttagtaattaccctacaaaggctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccctc 485  Q
    |||||| ||||||||| || ||||||||||||||||| ||||||||||| || ||| |||| ||||||| |||||||| |||  ||||| ||| ||||      
T  27491737 ttagtagttaccctacgaaagctgctattacaaatgtcactgctggaactagattgcacattgcacttgtaactgaagaagagactagatataaacccca 27491836  T
Q  486 aaaaaataaattttgattcaatgtaatgctgcaaca 521  Q
    | | | ||||||||||| ||| ||||||||||||||    
T  27491837 agatagtaaattttgatccaaggtaatgctgcaaca 27491872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 596 - 681
Target Start/End: Original strand, 27493536 - 27493624
Alignment:
Q  596 agaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaat---aagagccagaatttctcct 681  Q
    ||||| ||||| ||||||| |||||| || | ||||| | ||||||||||| |||||||||||||||   | |||||||||||||||||    
T  27493536 agaatagaaacaaacccaactagtgaagtgatgaatatccaagaaaaactctttaaatttaaggaatgggaggagccagaatttctcct 27493624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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