View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4168_low_22 (Length: 285)
Name: NF4168_low_22
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4168_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 262
Target Start/End: Complemental strand, 43194576 - 43194316
Alignment:
| Q |
9 |
gattatacttgcaattgaagtattaattagattttgattatttgagtaattaatt-------atatgactacacttacgattgcaacggagtccgcggcc |
101 |
Q |
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| T |
43194576 |
gattacacttgcaattgaagtattaattagattttgattgtttgagtaattaattcattgatatatgactacacttacgattgcaacggagtccgcggca |
43194477 |
T |
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| Q |
102 |
gcaatggcaaggatatcagcacatgatacaacgccaggacatacattctctacagctgtcttaatgttgtcaatgacatcaaatccacgagcagagtttc |
201 |
Q |
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| T |
43194476 |
gcgatggcaaggatatcagcacatgatacaacgccaggacatacattctctacggctgtcttaatgttgtcaatgacatcaaatccacgagcagagtttc |
43194377 |
T |
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| Q |
202 |
tattcgggtttgcgttcttctctccagtaaagtttgatgtgtcatctagtagaattgaccc |
262 |
Q |
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| T |
43194376 |
tattcggatttgcgtttttctctccagtaaagtttgatgtgtcatctagtagaattgaccc |
43194316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 74 - 265
Target Start/End: Complemental strand, 43189050 - 43188859
Alignment:
| Q |
74 |
acttacgattgcaacggagtccgcggccgcaatggcaaggatatcagcacatgatacaacgccaggacatacattctctacagctgtcttaatgttgtca |
173 |
Q |
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| T |
43189050 |
acttacaattgcaacggagtctgtggcagcaatggcaaggatatcagcacatgatacaactccggggcatacgttctctaccgccgtctttatgttgtca |
43188951 |
T |
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| Q |
174 |
atgacatcaaatccacgagcagagtttctattcgggtttgcgttcttctctccagtaaagtttgatgtgtcatctagtagaattgacccatc |
265 |
Q |
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| T |
43188950 |
atgacatcgaatcctcgaacagagttcttattcgggagtgcgttcttctctccggtaaagtttgatgtgtcatctagtagaattgacccatc |
43188859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 73 - 266
Target Start/End: Complemental strand, 43180222 - 43180029
Alignment:
| Q |
73 |
cacttacgattgcaacggagtccgcggccgcaatggcaaggatatcagcacatgatacaacgccaggacatacattctctacagctgtcttaatgttgtc |
172 |
Q |
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| T |
43180222 |
cacttacaattgcaacagagtctgcggcagcaatggctaggatatcagcacatgatacaactccggggcatacgttctctacggctgtctttatgttgtc |
43180123 |
T |
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| Q |
173 |
aatgacatcaaatccacgagcagagtttctattcgggtttgcgttcttctctccagtaaagtttgatgtgtcatctagtagaattgacccatca |
266 |
Q |
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| T |
43180122 |
gatgacatcaaatccacgagcggagtttctatttggatttgcattcttctcaccggtaaagcttgatgtgtcatctaagagaattgatccatca |
43180029 |
T |
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