View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4168_low_25 (Length: 269)

Name: NF4168_low_25
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4168_low_25
NF4168_low_25
[»] chr8 (10 HSPs)
chr8 (15-251)||(548712-548948)
chr8 (15-191)||(23423716-23423892)
chr8 (15-191)||(894464-894640)
chr8 (47-191)||(906003-906147)
chr8 (47-133)||(1963481-1963567)
chr8 (215-251)||(23423680-23423716)
chr8 (70-120)||(566327-566377)
chr8 (47-127)||(2014862-2014942)
chr8 (47-127)||(2018245-2018325)
chr8 (47-127)||(2436899-2436979)
[»] scaffold0428 (1 HSPs)
scaffold0428 (47-124)||(1348-1425)
[»] chr6 (4 HSPs)
chr6 (47-128)||(845020-845101)
chr6 (47-128)||(870304-870385)
chr6 (47-124)||(33257230-33257307)
chr6 (47-190)||(8294448-8294591)
[»] scaffold0184 (1 HSPs)
scaffold0184 (48-124)||(15200-15276)
[»] scaffold0078 (1 HSPs)
scaffold0078 (48-124)||(57568-57644)
[»] chr7 (1 HSPs)
chr7 (47-87)||(41511443-41511483)
[»] chr1 (1 HSPs)
chr1 (47-127)||(5906147-5906227)


Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 548712 - 548948
Alignment:
Q  15 cataggcacaccataaactaaaccctctaaacttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtgga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  548712 cataggcacaccataaactaaaccctctaaacttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtgga 548811  T
Q  115 gcccatgatggaaccaccaagccttgatctttagtcctttccaagaaacctaatggtaaataatttaatggatcatcatcaagagtataattaaaattac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  548812 gcccatgatggaaccaccaagccttgatctttagtcctttccaagaaacctaatggtaaataatttaatggatcatcatcaagagtataattaaaattac 548911  T
Q  215 ccttttttgaagatccactaaaataagcagaacttga 251  Q
    |||||||||||||||||||||||||||||||||||||    
T  548912 ccttttttgaagatccactaaaataagcagaacttga 548948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 23423892 - 23423716
Alignment:
Q  15 cataggcacaccataaactaaaccctctaaacttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtgga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423892 cataggcacaccataaactaaaccctctaaacttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtgga 23423793  T
Q  115 gcccatgatggaaccaccaagccttgatctttagtcctttccaagaaacctaatggtaaataatttaatggatcatc 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423792 gcccatgatggaaccaccaagccttgatctttagtcctttccaagaaacctaatggtaaataatttaatggatcatc 23423716  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 894464 - 894640
Alignment:
Q  15 cataggcacaccataaactaaaccctctaaacttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtgga 114  Q
    |||||||||||||| ||| | || ||| ||| |||||| ||||||||||||| |||||||||||||| |||| | ||||| |||||| |||||||||||     
T  894464 cataggcacaccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggt 894563  T
Q  115 gcccatgatggaaccaccaagccttgatctttagtcctttccaagaaacctaatggtaaataatttaatggatcatc 191  Q
    |||||||||||||| ||||| || |  ||||| || |||||||  |||||   ||||||||||| ||||||||||||    
T  894564 gcccatgatggaacaaccaatccattttctttggttctttccagaaaaccacttggtaaataatctaatggatcatc 894640  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 191
Target Start/End: Complemental strand, 906147 - 906003
Alignment:
Q  47 ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaaccaccaagccttgatcttt 146  Q
    |||||| ||||||||||||| ||||||| |||||| |||| | ||||| |||||| ||||||||||| |||||||||||||| ||||| || |  |||||    
T  906147 ttgaaccccaaccacaatgactcaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaatccattttcttt 906048  T
Q  147 agtcctttccaagaaacctaatggtaaataatttaatggatcatc 191  Q
      | ||||||||||||||   ||||||||| | ||||||||||||    
T  906047 gtttctttccaagaaaccatttggtaaatactctaatggatcatc 906003  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 1963567 - 1963481
Alignment:
Q  47 ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaaccacca 133  Q
    ||||| ||||||||||||||| |||||| |||||| | ||||| |||||||| |||| ||  ||||| |||||||||||||| ||||    
T  1963567 ttgaattccaaccacaatgagacaaaaacccaccaatggaactgtgactaaggatttgaatctgtggtgcccatgatggaacaacca 1963481  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 23423716 - 23423680
Alignment:
Q  215 ccttttttgaagatccactaaaataagcagaacttga 251  Q
    |||||||||||||||||||||||||||||||| ||||    
T  23423716 ccttttttgaagatccactaaaataagcagaatttga 23423680  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 566327 - 566377
Alignment:
Q  70 aaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccat 120  Q
    ||||| ||| || |||||||||||| |||||||||||||||||| ||||||    
T  566327 aaaaatccatcaattgaactatgaccaagaatttcaacttgtggtgcccat 566377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 2014862 - 2014942
Alignment:
Q  47 ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaa 127  Q
    ||||| |||||||||| |||||||| || ||||||  |||||| |||| ||| |||| ||  ||||| |||||||||||||    
T  2014862 ttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctgtggtgcccatgatggaa 2014942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 2018245 - 2018325
Alignment:
Q  47 ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaa 127  Q
    ||||| |||||||||| |||||||| || ||||||  |||||| |||| ||| |||| ||  ||||| |||||||||||||    
T  2018245 ttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctgtggtgcccatgatggaa 2018325  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 2436979 - 2436899
Alignment:
Q  47 ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaa 127  Q
    ||||| |||| ||||| ||| |||| |||||||||  ||| || |||||||| |||| ||| ||||| |||||||||||||    
T  2436979 ttgaattccagccacagtgactcaagaaaccaccaactgatctgtgactaaggatttgaacctgtggtgcccatgatggaa 2436899  T

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Target: scaffold0428 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 1425 - 1348
Alignment:
Q  47 ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatg 124  Q
    |||||||||||||||||||| | |||||||||||| |||| | ||||| |||||| ||||||||||| ||||||||||    
T  1425 ttgaactccaaccacaatgacttaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatg 1348  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 845020 - 845101
Alignment:
Q  47 ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaac 128  Q
    ||||| |||||||||||||||| ||||| |||||| |||||||||||| ||||||||||| |||||| |||||  |||||||    
T  845020 ttgaattccaaccacaatgagttaaaaacccaccaattgaactatgaccaagaatttcaatttgtggtgcccaatatggaac 845101  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 870304 - 870385
Alignment:
Q  47 ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaac 128  Q
    ||||| |||||||||||||||| ||||| |||||| |||||||||||| ||||||||||| |||||| |||||  |||||||    
T  870304 ttgaattccaaccacaatgagttaaaaacccaccaattgaactatgaccaagaatttcaatttgtggtgcccaatatggaac 870385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 33257307 - 33257230
Alignment:
Q  47 ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatg 124  Q
    |||||||||||||||||||| | |||||||||||| |||| | ||||| |||||| ||||||||||| ||||||||||    
T  33257307 ttgaactccaaccacaatgacttaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatg 33257230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 190
Target Start/End: Original strand, 8294448 - 8294591
Alignment:
Q  47 ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaaccaccaagccttgatcttt 146  Q
    |||||||||||||||||||| | ||||| |||||| |||| | ||||| |||||| ||||||||||| |||||||||| ||| || |  || |  |||||    
T  8294448 ttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatgcaactactagtccattttcttt 8294547  T
Q  147 agtcctttccaagaaacctaatggtaaataatttaatggatcat 190  Q
     || |||||||| |||||   ||||||||| | |||||||||||    
T  8294548 tgttctttccaaaaaaccatttggtaaatactctaatggatcat 8294591  T

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Target: scaffold0184 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 15200 - 15276
Alignment:
Q  48 tgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatg 124  Q
    |||| |||||||||||||| | ||||| ||||||  |||||||||  |||| ||||||||||| || ||||||||||    
T  15200 tgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatg 15276  T

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Target: scaffold0078 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 57644 - 57568
Alignment:
Q  48 tgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatg 124  Q
    |||| |||||||||||||| | ||||| ||||||  |||||||||  |||| ||||||||||| || ||||||||||    
T  57644 tgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatg 57568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 41511483 - 41511443
Alignment:
Q  47 ttgaactccaaccacaatgagtcaaaaaaccaccagttgaa 87  Q
    ||||| |||||||||||||||||||||| |||||| |||||    
T  41511483 ttgaattccaaccacaatgagtcaaaaatccaccaattgaa 41511443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 5906227 - 5906147
Alignment:
Q  47 ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaa 127  Q
    |||||||||||||||||||| |||| || ||||||  |||  | |||||||| |||||||  || || |||||||||||||    
T  5906227 ttgaactccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaa 5906147  T

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