View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4168_low_3 (Length: 632)
Name: NF4168_low_3
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4168_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 5e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 173 - 548
Target Start/End: Complemental strand, 32713561 - 32713194
Alignment:
| Q |
173 |
atagcacttttcggtaatggaaaacattaggtggcaacttctaacgatgggatcgattaagctaaatacaggtggagctaatagagttaatagtgtgtat |
272 |
Q |
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| T |
32713561 |
atagcacttt--ggtaatggagaatattaggtgacaacctctggtgatgggatggattcggctaaatattggtggagccactagaggtaatagtatgtct |
32713464 |
T |
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| Q |
273 |
ggttaaggaggaattttgcataatgatagaggtgagtggatatatatgtggattttcaaagtgtttgggagtgtggagtgcatttgtagcagagttatgt |
372 |
Q |
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| T |
32713463 |
ggttgcggaggaattttgcgtaatgatagaggtgagtggactt----gtggattttcaaagtgtatgggagtgtgtagtatatttgtagcagagttctgg |
32713368 |
T |
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| Q |
373 |
ggaatttttgaaggtttgaagatagctagagagtgtggctttcataaattggagtttcgtgtagattcaagagtagtggggtctaatcttgagtctggta |
472 |
Q |
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| T |
32713367 |
agagttttcaaaggtttaaagatagctagagagagtggctttcataaattggagcttcatgtagattcaagactagtggtgtctaatcttgagtatggta |
32713268 |
T |
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| Q |
473 |
acggtgggtcatttattgggtggagtttgttaatcaatattagaagaaaatgtggagctaaattgggaggtttgaa |
548 |
Q |
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| T |
32713267 |
ac-gagggtcagctgttgggtggagtctgttaatcaatattaaaagattat-tggagctaaattgggaagtttgaa |
32713194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 32713613 - 32713564
Alignment:
| Q |
62 |
aaaatggttcaagatgagacttttgtgttgcccgttaaactttggatgga |
111 |
Q |
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| T |
32713613 |
aaaatggttcaagatgagacttttgtgttgcccattaaaccgtggatgga |
32713564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 293 - 459
Target Start/End: Original strand, 14219897 - 14220062
Alignment:
| Q |
293 |
taatgatagaggtgagtggatatatatgtggattttcaaagtgtttgggagtgtggagtgcatttgtagcagagttatgtggaa---tttttgaaggttt |
389 |
Q |
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| T |
14219897 |
taatgatagaggtgagtgaattt----gtggattttcaaagctttagggagtgtgtagtgtgtttgtagcagagttatgtggaattttttttaaaggttt |
14219992 |
T |
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| Q |
390 |
gaagatagctagagagtgtggctttcataaattggagtttcgtgtagattcaagagtagtggggtctaat |
459 |
Q |
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| T |
14219993 |
aaagatagctatagagcgtggattttataaaatggagcttaatttagatttaaaagtagtggtgtctaat |
14220062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 440
Target Start/End: Complemental strand, 4085861 - 4085740
Alignment:
| Q |
319 |
tgtggattttcaaagtgtttgggagtgtggagtgcatttgtagcagagttatgtggaatttttgaaggtttgaagatagctagagagtgtggctttcata |
418 |
Q |
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|||||||||||||| || || |||||||| ||||| | ||| || ||| |||| || |||| ||||| |||||||| ||| |||| |||| ||||||| |
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| T |
4085861 |
tgtggattttcaaaatggttaggagtgtgtagtgcgtatgtggctgagctatggggtgttttggaaggcttgaagatggctcgagaacgtggttttcata |
4085762 |
T |
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| Q |
419 |
aattggagtttcgtgtagattc |
440 |
Q |
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| T |
4085761 |
aagtggagcttcatgttgattc |
4085740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 595
Target Start/End: Complemental strand, 50657447 - 50657407
Alignment:
| Q |
555 |
atttgtcatacctttagagaagcaaattcttgtgcaaatgt |
595 |
Q |
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| T |
50657447 |
atttgtcatacttttagaaaagcaaattcttgtgcagatgt |
50657407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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