View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4168_low_30 (Length: 243)

Name: NF4168_low_30
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4168_low_30
NF4168_low_30
[»] chr1 (4 HSPs)
chr1 (9-209)||(47847973-47848173)
chr1 (88-201)||(6025961-6026077)
chr1 (132-203)||(15606318-15606390)
chr1 (130-197)||(3335143-3335211)
[»] chr6 (3 HSPs)
chr6 (132-200)||(2732936-2733005)
chr6 (131-200)||(33532483-33532553)
chr6 (134-202)||(5730183-5730252)
[»] chr5 (3 HSPs)
chr5 (127-192)||(11257723-11257789)
chr5 (127-198)||(7430113-7430185)
chr5 (127-191)||(16214112-16214177)
[»] chr3 (5 HSPs)
chr3 (130-203)||(1813268-1813341)
chr3 (131-202)||(43381175-43381247)
chr3 (125-195)||(15802566-15802637)
chr3 (136-201)||(50402644-50402710)
chr3 (132-191)||(2990983-2991043)
[»] chr7 (6 HSPs)
chr7 (88-203)||(24942451-24942567)
chr7 (90-154)||(7105005-7105069)
chr7 (133-195)||(33007893-33007955)
chr7 (127-160)||(2894915-2894948)
chr7 (131-191)||(23117360-23117421)
chr7 (171-203)||(24673413-24673445)
[»] chr4 (4 HSPs)
chr4 (130-191)||(33714228-33714290)
chr4 (131-197)||(27722407-27722474)
chr4 (127-155)||(20709994-20710022)
chr4 (127-198)||(26275534-26275606)
[»] scaffold0194 (1 HSPs)
scaffold0194 (131-199)||(13785-13854)
[»] chr2 (1 HSPs)
chr2 (171-202)||(32321504-32321535)
[»] chr8 (3 HSPs)
chr8 (131-196)||(24857327-24857393)
chr8 (113-201)||(37632119-37632208)
chr8 (128-192)||(45371098-45371163)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 47848173 - 47847973
Alignment:
Q  9 ttattacttactatattagatactagctattggcacctttctgcagtattgattggttacggatgactatagctcataacagtgttgttaaatagcggtg 108  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47848173 ttattacttactatattagatactagcgattggcacctttctgcagtattgattgattacggatgactatagctcataacagtgttgttaaatagcggtg 47848074  T
Q  109 atagcagcactgcagcaaagcggaatttgaacaaatcgctattgttccacgacatgccatttgtacaaaatgttgtcaaatagcagctatagcggatcaa 208  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  47848073 atagcagcactacagcaaagcggaatttgaacaaatcgctattgttccacgatatgccatttgtacaaaatgttgtcaaatagcggctatagcggatcaa 47847974  T
Q  209 c 209  Q
    |    
T  47847973 c 47847973  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 6026077 - 6025961
Alignment:
Q  88 cagtgttgttaaatagcggtg--atagcagcactgcagcaaagcggaatttgaacaaatcgctattgttccacgacatgccattt-gtacaaaatgttgt 184  Q
    ||||||||||||||||||  |  ||||  ||| || |||| || ||||||||||||||| | ||||||||| ||| |||| |||| ||||||||||||||    
T  6026077 cagtgttgttaaatagcgcggctatagaggcattgaagcataggggaatttgaacaaatagttattgttccgcgatatgctatttagtacaaaatgttgt 6025978  T
Q  185 caaatagcagctatagc 201  Q
    |||||||  ||||||||    
T  6025977 caaatagtggctatagc 6025961  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 15606390 - 15606318
Alignment:
Q  132 aatttgaacaaatcgctattgttccacgacatgccattt-gtacaaaatgttgtcaaatagcagctatagcgg 203  Q
    ||||| |||||||| |||||||||  | | |||| |||| |||||||||||||||||||| ||||||||||||    
T  15606390 aatttaaacaaatcactattgttctgctatatgctatttagtacaaaatgttgtcaaataacagctatagcgg 15606318  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 3335143 - 3335211
Alignment:
Q  130 ggaatttgaacaaatcgctattgttccacgacatgccattt-gtacaaaatgttgtcaaatagcagcta 197  Q
    |||||||||||||||| |||||||||| |||||  |  ||| ||| ||| |||||||||||||||||||    
T  3335143 ggaatttgaacaaatcactattgttccgcgacaccctgtttagtataaagtgttgtcaaatagcagcta 3335211  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 2732936 - 2733005
Alignment:
Q  132 aatttgaacaaatcgctattgttccacgacatgccattt-gtacaaaatgttgtcaaatagcagctatag 200  Q
    |||||||||||||||||||||||   ||| |||| |||| ||||||||||||||||||||||||||||||    
T  2732936 aatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatagcagctatag 2733005  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 33532553 - 33532483
Alignment:
Q  131 gaatttgaacaaatcgctattgttccacgacatgccattt-gtacaaaatgttgtcaaatagcagctatag 200  Q
    ||||||||||||||||| |||||| ||| | | || |||| ||||| |||||||||||| |||||||||||    
T  33532553 gaatttgaacaaatcgccattgttacactatacgctatttagtacagaatgttgtcaaacagcagctatag 33532483  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 5730252 - 5730183
Alignment:
Q  134 tttgaacaaatcgctattgttccacgacatgccattt-gtacaaaatgttgtcaaatagcagctatagcg 202  Q
    |||||| |||||||| |||||||| || |||| |||| ||||||||| ||||||||||| |||| |||||    
T  5730252 tttgaataaatcgctcttgttccatgatatgctatttagtacaaaatcttgtcaaatagtagctctagcg 5730183  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 11257723 - 11257789
Alignment:
Q  127 agcggaatttgaacaaatcgctattgttccacgacatgccattt-gtacaaaatgttgtcaaatagc 192  Q
    |||||||| |||||||||||||||||||  |||| |||| |||| ||||||||||||||||||||||    
T  11257723 agcggaatatgaacaaatcgctattgttatacgatatgctatttagtacaaaatgttgtcaaatagc 11257789  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 7430113 - 7430185
Alignment:
Q  127 agcggaatttgaacaaatcgctattgttccacgacatgccattt-gtacaaaatgttgtcaaatagcagctat 198  Q
    ||||||||||| ||||| |||||||||||||| | | || |||| |||||| ||||||||||||||| |||||    
T  7430113 agcggaatttggacaaaccgctattgttccacaatacgctatttagtacaagatgttgtcaaatagcggctat 7430185  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 16214177 - 16214112
Alignment:
Q  127 agcggaatttgaacaaatcgctattgttccacgacatgccattt-gtacaaaatgttgtcaaatag 191  Q
    |||||||||||||| ||||||| |||||||| || | || |||| ||||| |||||||||||||||    
T  16214177 agcggaatttgaactaatcgctgttgttccatgatacgcaatttagtacataatgttgtcaaatag 16214112  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 1813268 - 1813341
Alignment:
Q  130 ggaatttgaacaaatcgctattgttccacgacatgccatttgtacaaaatgttgtcaaatagcagctatagcgg 203  Q
    |||||||||||||||| |||||||||| ||| |||||||| | || || |||||||||||||  ||||||||||    
T  1813268 ggaatttgaacaaatcactattgttccgcgatatgccattagcacgaagtgttgtcaaatagtggctatagcgg 1813341  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 43381175 - 43381247
Alignment:
Q  131 gaatttgaacaaatcgctattgttccacgacatgccatttg-tacaaaatgttgtcaaatagcagctatagcg 202  Q
    ||||||||| ||||||||||| |||| ||| |||| ||||  |||||||||||||||||||| ||||||||||    
T  43381175 gaatttgaataaatcgctattattccgcgatatgcaatttaatacaaaatgttgtcaaatagaagctatagcg 43381247  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 15802566 - 15802637
Alignment:
Q  125 aaagcggaatttgaacaaatcgctattgttccacgacatgccat-ttgtacaaaatgttgtcaaatagcagc 195  Q
    ||||| ||||||||||||||||||||| |||| ||| |||  || | ||||||| |||||||||||||||||    
T  15802566 aaagcagaatttgaacaaatcgctattcttccgcgatatgttatatagtacaaagtgttgtcaaatagcagc 15802637  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 50402710 - 50402644
Alignment:
Q  136 tgaacaaatcgctattgttccacgacatgccattt-gtacaaaatgttgtcaaatagcagctatagc 201  Q
    |||||||||| |||||||||| | | |||| |||| ||| ||| |||||||||||||||||||||||    
T  50402710 tgaacaaatcactattgttccgcaatatgctatttagtataaagtgttgtcaaatagcagctatagc 50402644  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 2991043 - 2990983
Alignment:
Q  132 aatttgaacaaatcgctattgttccacgacatgccattt-gtacaaaatgttgtcaaatag 191  Q
    |||||||||||||  || ||||||||||| | || |||| |||||||||||||||||||||    
T  2991043 aatttgaacaaatttcttttgttccacgatacgctatttagtacaaaatgttgtcaaatag 2990983  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 24942451 - 24942567
Alignment:
Q  88 cagtgttgttaaatagcggtgatagcagcactgcagcaaagcggaatttgaacaaatcgctattgttccacgacatgccattt-gtacaaaatgttgtca 186  Q
    |||||||||||| ||| ||  |||| ||||||  |||| | | |||| |||||| ||||||||||||||| || | || | || ||||||||||||||||    
T  24942451 cagtgttgttaagtagaggctataggagcactatagcataacagaatatgaacagatcgctattgttccatgatacgctaattagtacaaaatgttgtca 24942550  T
Q  187 aatagcagctatagcgg 203  Q
    |||||||||| ||||||    
T  24942551 aatagcagctgtagcgg 24942567  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 7105069 - 7105005
Alignment:
Q  90 gtgttgttaaatagcggtgatagcagcactgcagcaaagcggaatttgaacaaatcgctattgtt 154  Q
    |||||||||||||| ||  ||||||||  ||||||| |||  |||||||||||||||||||||||    
T  7105069 gtgttgttaaatagtggctatagcagcgttgcagcatagcataatttgaacaaatcgctattgtt 7105005  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 33007955 - 33007893
Alignment:
Q  133 atttgaacaaatcgctattgttccacgacatgccatttgtacaaaatgttgtcaaatagcagc 195  Q
    ||||||||||| ||||||| |||| ||| | || ||| | |||||||||||||||||||||||    
T  33007955 atttgaacaaaccgctattattccgcgataagctattagcacaaaatgttgtcaaatagcagc 33007893  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 2894915 - 2894948
Alignment:
Q  127 agcggaatttgaacaaatcgctattgttccacga 160  Q
    ||||||||||||||||| ||||||||||||||||    
T  2894915 agcggaatttgaacaaaccgctattgttccacga 2894948  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 23117421 - 23117360
Alignment:
Q  131 gaatttgaacaaatcgctattgttccacgacatgccattt-gtacaaaatgttgtcaaatag 191  Q
    ||||||||||||||||||||| ||||| || |||| |||| | |||||||||||| ||||||    
T  23117421 gaatttgaacaaatcgctatttttccatgatatgctatttagcacaaaatgttgtgaaatag 23117360  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 24673445 - 24673413
Alignment:
Q  171 gtacaaaatgttgtcaaatagcagctatagcgg 203  Q
    |||||||||||||||||||||| ||||||||||    
T  24673445 gtacaaaatgttgtcaaatagccgctatagcgg 24673413  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 33714290 - 33714228
Alignment:
Q  130 ggaatttgaacaaatcgctattgttccacgacatgccattt-gtacaaaatgttgtcaaatag 191  Q
    ||||||||||||||||||| ||||||||||| | ||||||| ||||||||| |||| ||||||    
T  33714290 ggaatttgaacaaatcgctgttgttccacgataagccatttagtacaaaatattgtgaaatag 33714228  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 27722474 - 27722407
Alignment:
Q  131 gaatttgaacaaatcgctattgttccacgacatgccatt-tgtacaaaatgttgtcaaatagcagcta 197  Q
    |||||||||| ||| ||||||||||||||| |||| |||  ||||||||| |||||||||| ||||||    
T  27722474 gaatttgaactaattgctattgttccacgatatgctattaagtacaaaatattgtcaaatatcagcta 27722407  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 155
Target Start/End: Complemental strand, 20710022 - 20709994
Alignment:
Q  127 agcggaatttgaacaaatcgctattgttc 155  Q
    |||||||||||||||||||||||||||||    
T  20710022 agcggaatttgaacaaatcgctattgttc 20709994  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 26275606 - 26275534
Alignment:
Q  127 agcggaatttgaacaaatcgctattgttccacgacatgccattt-gtacaaaatgttgtcaaatagcagctat 198  Q
    ||||| |||||||||||||||||||||||||  | | || |||| ||||||||| |||| ||||||| |||||    
T  26275606 agcgggatttgaacaaatcgctattgttccaaaatacgctatttagtacaaaatattgtgaaatagcggctat 26275534  T

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Target: scaffold0194 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 13785 - 13854
Alignment:
Q  131 gaatttgaacaaatcgctattgttccacgacatgccattt-gtacaaaatgttgtcaaatagcagctata 199  Q
    ||||||||||||||| |||||||||||| | ||||| ||| ||||| | |||||||||||| ||||||||    
T  13785 gaatttgaacaaatctctattgttccacaatatgccgtttagtacatagtgttgtcaaataacagctata 13854  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 202
Target Start/End: Original strand, 32321504 - 32321535
Alignment:
Q  171 gtacaaaatgttgtcaaatagcagctatagcg 202  Q
    ||||||||||||||||||||||||||||||||    
T  32321504 gtacaaaatgttgtcaaatagcagctatagcg 32321535  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 24857393 - 24857327
Alignment:
Q  131 gaatttgaacaaatcgctattgttccacgacatgccattt-gtacaaaatgttgtcaaatagcagct 196  Q
    |||||| |||||||||| ||| ||||| || |||| |||| ||||||||||||||||||||| ||||    
T  24857393 gaattttaacaaatcgccattcttccatgatatgctattttgtacaaaatgttgtcaaatagaagct 24857327  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 37632208 - 37632119
Alignment:
Q  113 cagcactgcagcaaagcggaatttgaacaaatcgctattgttccacgacatgccatttgt-acaaaatgttgtcaaatagcagctatagc 201  Q
    ||||||| ||||  || |||||| |||||||||| || |||||||||| | || |||| | |||||||| | ||||||||||||||||||    
T  37632208 cagcactacagcgtagtggaattggaacaaatcgttactgttccacgatacgctatttattacaaaatggtatcaaatagcagctatagc 37632119  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 45371163 - 45371098
Alignment:
Q  128 gcggaatttgaacaaatcgctattgttccacgacatgccattt-gtacaaaatgttgtcaaatagc 192  Q
    |||||||||| ||||| | |||||||||| | | |||| |||| ||||||||||||||||||||||    
T  45371163 gcggaatttggacaaaccactattgttccgcaatatgctatttagtacaaaatgttgtcaaatagc 45371098  T

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