View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4168_low_34 (Length: 237)

Name: NF4168_low_34
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4168_low_34
NF4168_low_34
[»] chr5 (3 HSPs)
chr5 (1-222)||(26354965-26355186)
chr5 (137-216)||(9814902-9814981)
chr5 (2-82)||(9815036-9815116)
[»] chr8 (3 HSPs)
chr8 (1-86)||(22652126-22652211)
chr8 (1-81)||(22689693-22689773)
chr8 (1-61)||(22685718-22685778)
[»] chr3 (21 HSPs)
chr3 (1-114)||(19951091-19951204)
chr3 (1-216)||(19812145-19812360)
chr3 (1-88)||(20046116-20046203)
chr3 (2-93)||(19956072-19956163)
chr3 (4-83)||(19989520-19989599)
chr3 (2-81)||(24840013-24840092)
chr3 (1-81)||(19848990-19849070)
chr3 (1-81)||(19858072-19858152)
chr3 (1-81)||(20036641-20036721)
chr3 (1-86)||(26646999-26647084)
chr3 (1-93)||(19838381-19838473)
chr3 (9-81)||(19943720-19943792)
chr3 (146-216)||(19838249-19838319)
chr3 (146-216)||(19955940-19956010)
chr3 (127-216)||(19818422-19818511)
chr3 (1-78)||(26653155-26653232)
chr3 (2-71)||(30914653-30914722)
chr3 (146-213)||(20045991-20046058)
chr3 (2-63)||(20016240-20016301)
chr3 (184-216)||(19853377-19853409)
chr3 (1-61)||(19853532-19853592)
[»] chr4 (1 HSPs)
chr4 (9-90)||(6397784-6397865)
[»] chr1 (1 HSPs)
chr1 (32-103)||(1717192-1717263)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26354965 - 26355186
Alignment:
Q  1 aaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggctta 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26354965 aaaaacaaaaattgataaccaagcaacaatgaatgcttcatgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggctta 26355064  T
Q  101 cctgttttagtctttttaagttcctttcttgcattgatcatcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26355065 cctgttttagtctttttaagttcctttcttgcattgatcatcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaa 26355164  T
Q  201 tgacagggtaacccccgagaac 222  Q
    |||||||||||||||| |||||    
T  26355165 tgacagggtaacccccaagaac 26355186  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 9814981 - 9814902
Alignment:
Q  137 atcatcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaaccccc 216  Q
    |||| ||||| ||||||| |||||||||| ||| |||||||||    ||||||||||||||| |||||||| ||||||||    
T  9814981 atcaacttctcttccacctctctcatttcccggcctttaacatctatgaaaataggatcaccgatgacaggataaccccc 9814902  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 9815116 - 9815036
Alignment:
Q  2 aaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccat 82  Q
    |||||||| ||||| ||||| | | ||||||| ||||| || |||| |||||||||||| || ||||||| ||||||||||    
T  9815116 aaaacaaagattgacaaccacgtagcaatgaacgcttcatgctcaatttcactacctttgtcgatgaaaaaatccatccat 9815036  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 22652126 - 22652211
Alignment:
Q  1 aaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatg 86  Q
    ||||||||||||||| ||||||| | ||| ||| ||||| ||||||| ||||||||||||||| ||||||| ||||||||||||||    
T  22652126 aaaaacaaaaattgacaaccaagtagcaaggaacgcttcatgttcaatttcactacctttatcgatgaaaatatccatccataatg 22652211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 22689693 - 22689773
Alignment:
Q  1 aaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatcca 81  Q
    ||||||||||||||| ||||||| | |||  |||||||| ||||||| |||| |||| ||||| |||||||||||||||||    
T  22689693 aaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaaattcattaccattatcgatgaaaacatccatcca 22689773  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 22685718 - 22685778
Alignment:
Q  1 aaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactaccttta 61  Q
    ||||||||||| ||| ||||||||| |||  |||||||| || |||| |||||||||||||    
T  22685718 aaaaacaaaaagtgacaaccaagcagcaagaaatgcttcatgctcaatttcactaccttta 22685778  T

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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 19951204 - 19951091
Alignment:
Q  1 aaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggctta 100  Q
    ||||||||||| ||| ||||||| ||||| ||| ||||| ||||||| |||||||||||||||  |||||| |||||||||||||| |  ||| | | ||    
T  19951204 aaaaacaaaaagtgacaaccaagtaacaaggaaggcttcatgttcaatttcactacctttatcagtgaaaatatccatccataatgttgctctagccata 19951105  T
Q  101 cctgttttagtctt 114  Q
    ||||||||||||||    
T  19951104 cctgttttagtctt 19951091  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 19812360 - 19812145
Alignment:
Q  1 aaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggctta 100  Q
    ||||||||||||||| ||||||| | |||  |||||||| ||||||| ||||||||||||| | | ||||| ||  ||||||  |||| |  | | ||||    
T  19812360 aaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttaccaacgaaaatattgatccattttgatgtggtagcctta 19812261  T
Q  101 cctgttttagtctttttaagttcctttcttgcattgatcatcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaa 200  Q
    ||| ||||| |||    | ||| |  |||||||  ||| | ||||||||||||| ||||||||||| |||||| ||| || |  ||||||||||||||||    
T  19812260 ccttttttactctgccaaggtttccgtcttgcaaggatgagcttcttttccacctctctcatttcttggtcttgaactttggtaaaaataggatcaccaa 19812161  T
Q  201 tgacagggtaaccccc 216  Q
    ||| ||||||||||||    
T  19812160 tgatagggtaaccccc 19812145  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 20046203 - 20046116
Alignment:
Q  1 aaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgat 88  Q
    ||||||||||||||| ||||||| |  || ||| ||||||||||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  20046203 aaaaacaaaaattgacaaccaagtagtaaggaaggcttcgtgttcaatttcactacctttatcgatgaacatatccatccataatgat 20046116  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 19956163 - 19956072
Alignment:
Q  2 aaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatattct 93  Q
    |||||||||||||| ||||||| | |||  || ||||| ||||||| ||||||||||||||| ||||||| ||||||||||| |||| ||||    
T  19956163 aaaacaaaaattgacaaccaagtagcaagaaaagcttcatgttcaatttcactacctttatcaatgaaaatatccatccatagtgatgttct 19956072  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 19989599 - 19989520
Alignment:
Q  4 aacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccata 83  Q
    |||||||||||| ||||||| | |||  |||||||| ||||||| |||| |||||||||| |||||||||||||||||||    
T  19989599 aacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatccata 19989520  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 24840013 - 24840092
Alignment:
Q  2 aaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatcca 81  Q
    |||||||||||||| ||||||| | |||  |||||||| || |||||||||||||||||||| ||||||| |||||||||    
T  24840013 aaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatcca 24840092  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 19849070 - 19848990
Alignment:
Q  1 aaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatcca 81  Q
    ||||||||||| ||| ||||||| | |||  |||||||| ||||||| ||||||||||||||| ||||||| |||||||||    
T  19849070 aaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaatgaaaatatccatcca 19848990  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 19858152 - 19858072
Alignment:
Q  1 aaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatcca 81  Q
    ||||||||||||||| ||||||| | |||  |||||||| || |||| ||||||||||||||| ||||||| |||||||||    
T  19858152 aaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 19858072  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 20036641 - 20036721
Alignment:
Q  1 aaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatcca 81  Q
    ||||||||||| ||| ||||||| | |||  |||||||| ||||||| ||||||||||||||| ||||||| |||||||||    
T  20036641 aaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaatgaaaatatccatcca 20036721  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 26647084 - 26646999
Alignment:
Q  1 aaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatg 86  Q
    ||||||| ||| ||| ||||||| |  || ||||||||| ||||||| ||||||||||||||||||||||  ||| ||||||||||    
T  26647084 aaaaacataaactgacaaccaagtagaaaggaatgcttcatgttcaatttcactacctttatccatgaaactatcgatccataatg 26646999  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 19838473 - 19838381
Alignment:
Q  1 aaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatattct 93  Q
    ||||||||||||||| ||||||| | | |  || ||||| ||||||| ||| ||||||||||| ||||||| ||||||||||| |||| ||||    
T  19838473 aaaaacaaaaattgacaaccaagtagctagaaaagcttcatgttcaatttcgctacctttatcgatgaaaatatccatccatagtgatgttct 19838381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 19943792 - 19943720
Alignment:
Q  9 aaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatcca 81  Q
    ||||||| ||||||| | |||  |||||||| ||||||| ||||||||||||||| ||||||| |||||||||    
T  19943792 aaattgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcgatgaaaatatccatcca 19943720  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 19838319 - 19838249
Alignment:
Q  146 ttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaaccccc 216  Q
    ||||||||| ||||||||||| ||||||| || |  | ||||| || ||||||||||||||||||||||||    
T  19838319 ttttccacctctctcatttcttggtctttgacttcggtgaaaacagaatcaccaatgacagggtaaccccc 19838249  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 19956010 - 19955940
Alignment:
Q  146 ttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaaccccc 216  Q
    ||||||||| ||||||||||| ||||||| || |  | ||||| || ||||||||||||||||||||||||    
T  19956010 ttttccacctctctcatttcttggtctttgacttcggtgaaaacagaatcaccaatgacagggtaaccccc 19955940  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 19818511 - 19818422
Alignment:
Q  127 tcttgcattgatcatcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaaccccc 216  Q
    ||||||| |||| | ||||||||| ||| ||||||||||| | |||||||| ||   ||||| |||||||||||||| ||| ||||||||    
T  19818511 tcttgcaatgatgagcttcttttcaacctctctcatttcttgatctttaactttgatgaaaacaggatcaccaatgataggataaccccc 19818422  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 26653232 - 26653155
Alignment:
Q  1 aaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccat 78  Q
    ||||||||||||||| ||||||||  ||| |||||| || ||||||| |||||||||||  || ||||||| ||||||    
T  26653232 aaaaacaaaaattgacaaccaagctgcaaggaatgcatcatgttcaatttcactaccttagtcaatgaaaatatccat 26653155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 30914722 - 30914653
Alignment:
Q  2 aaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaa 71  Q
    |||||||||||||| ||||||| |  || ||||||||| ||||||| ||||||| ||||||| |||||||    
T  30914722 aaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaa 30914653  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 20046058 - 20045991
Alignment:
Q  146 ttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacc 213  Q
    ||||||||| ||||||||||| |||||||||| || | ||||| | |||| ||||||| |||||||||    
T  20046058 ttttccacctctctcatttcttggtctttaactttggtgaaaacatgatcgccaatgatagggtaacc 20045991  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 20016240 - 20016301
Alignment:
Q  2 aaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatc 63  Q
    |||||||||||||| | ||||| | |||  |||||||| ||||||| |||||||||||||||    
T  20016240 aaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactacctttatc 20016301  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 19853409 - 19853377
Alignment:
Q  184 gaaaataggatcaccaatgacagggtaaccccc 216  Q
    |||||||||||||||||||| ||||||||||||    
T  19853409 gaaaataggatcaccaatgatagggtaaccccc 19853377  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 19853592 - 19853532
Alignment:
Q  1 aaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactaccttta 61  Q
    |||||||||||| || ||||||| | |||  |||||||| ||||||| |||||||||||||    
T  19853592 aaaaacaaaaatagacaaccaagtagcaagaaatgcttcatgttcaatttcactaccttta 19853532  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 6397784 - 6397865
Alignment:
Q  9 aaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatat 90  Q
    ||||||| ||||| | | ||| ||| ||||| ||||||| ||||||||||||||| ||||| | ||||||||||||||||||    
T  6397784 aaattgacaaccaggtagcaaggaaggcttcatgttcaatttcactacctttatcgatgaacatatccatccataatgatat 6397865  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 1717263 - 1717192
Alignment:
Q  32 aatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggcttacct 103  Q
    |||||||| ||||||| ||||||||||||||| |  ||||||||||||||||||| | |||| ||| |||||    
T  1717263 aatgcttcatgttcaatttcactacctttatcaacaaaaacatccatccataatgttgttctaggcctacct 1717192  T

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