View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4168_low_4 (Length: 540)
Name: NF4168_low_4
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4168_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 14 - 523
Target Start/End: Original strand, 47848409 - 47848918
Alignment:
| Q |
14 |
tgaaatgaaaaaaggcgataactatttacattccaaaaagtaccaaaatagttgagcaagtaatccaatacaagaggaagatgtacgctgatgattgtaa |
113 |
Q |
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| T |
47848409 |
tgaaacgaaaaaaggcgataactatttacattccaaaaagtaccaaaatagttgagcaagtaatccaatacaagaggaagatgtacgctaatgattgtaa |
47848508 |
T |
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| Q |
114 |
tactttttaatttaataaagatttatgtacaatcctaaaaaatccaggggagattggagcattgcaaaaattatttttgtatgaactatatagcaaacaa |
213 |
Q |
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| T |
47848509 |
tactttttaatttaataaagatttatgtacaatcctaaaaaatccaggggagattggagcattgcaaaaattatttttgtatgaaccatatagcaaacaa |
47848608 |
T |
|
| Q |
214 |
cttaccattgcactcagataagtttagatccaccacatcttgaagcatggattggcggttgtgtaaatgttgaattgcatctggaggatcaagaacgaat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47848609 |
cttaccattgcactcagataagtttagatccaccacatcttgaagcatggattggcggttgtgtaaatgttgaattgcatctggaggatcaagaacgaat |
47848708 |
T |
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| Q |
314 |
acatcgggatgtttttgcctgaaatccttcaataatacgaaaaaggggaaaaaagtccaatcagctccatcaaaatacaaactttatggagaatttggaa |
413 |
Q |
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| T |
47848709 |
acatcgggatgtttttgcctgaaatccttcaataatacgaaaaagggggaaaaagtccaatcagctccatcaaaatacaaactttatggagaatttggaa |
47848808 |
T |
|
| Q |
414 |
agcatgaagcaatcactaattagtaattacatatttttggtgagctatggacatttggaagaaaggttaagtaataaaaccaatattgtaatttatctat |
513 |
Q |
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| T |
47848809 |
agcatgaagcaatcactaattagtaattacatatttttggtgagctatggacatttggaagaaaggttaagtaataaaaccaatattgtaatttatctat |
47848908 |
T |
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| Q |
514 |
tcatggaact |
523 |
Q |
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| T |
47848909 |
tcatggaact |
47848918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 345
Target Start/End: Complemental strand, 386182 - 386052
Alignment:
| Q |
215 |
ttaccattgcactcagataagtttagatccaccacatcttgaagcatggattggcggttgtgtaaatgttgaattgcatctggaggatcaagaacgaata |
314 |
Q |
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||||||| ||| |||||||||||||| || |||||| ||| ||||||||||| || ||| | || || ||||||||||||||||| ||||| | | || |
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| T |
386182 |
ttaccatggcagtcagataagtttagctctgccacattttgtagcatggattgtcgattgagcaagtgctgaattgcatctggagggtcaaggatggtta |
386083 |
T |
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| Q |
315 |
catcgggatgtttttgcctgaaatccttcaa |
345 |
Q |
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| T |
386082 |
cttcgggatgtttatgcctgtaatccttcaa |
386052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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