View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4168_low_42 (Length: 214)
Name: NF4168_low_42
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4168_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 35036653 - 35036506
Alignment:
| Q |
49 |
tttgggtgggagtaaactaacataccagacaagtggctttgattgtggtgtcagcatcacgaccatctatatcttgatcatcaacggttgaaaggagcac |
148 |
Q |
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| T |
35036653 |
tttgggtgggagtaaactaacataccagacaagttgctttgattgtggtgtcagcatcacgaccatctatatcttgatcatcaacggttgaaaggagcac |
35036554 |
T |
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| Q |
149 |
atccatgaagtcaagtttggtgccggcaggtttcttgttgcgtctgtg |
196 |
Q |
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| T |
35036553 |
atccatgaagtcaagtttggtgccggcaggtttcttgttgcgtttgtg |
35036506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 35020429 - 35020343
Alignment:
| Q |
68 |
acataccagacaagtggctttgattgtggtgtcagcatcacgaccatctatatcttgatcatcaacggttgaaaggagcacatccatgaa |
157 |
Q |
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| T |
35020429 |
acataccatacaagtggctttgattgtagtatcagcatcacggccatctaaatct---tcatcaacggttgaaagcagcacatccatgaa |
35020343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 35044762 - 35044697
Alignment:
| Q |
68 |
acataccagacaagtggctttgattgtggtgtcagcatcacgaccatctatatcttgatcatcaac |
133 |
Q |
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| T |
35044762 |
acataccagacacgtagttttgatagtagttccagcatcacgaccatcaatttcttgatcatcaac |
35044697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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