View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4168_low_44 (Length: 202)

Name: NF4168_low_44
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4168_low_44
NF4168_low_44
[»] chr8 (2 HSPs)
chr8 (111-197)||(18789389-18789475)
chr8 (29-111)||(18789541-18789622)
[»] chr7 (4 HSPs)
chr7 (111-197)||(10924402-10924488)
chr7 (29-111)||(10924554-10924635)
chr7 (18-109)||(7560795-7560886)
chr7 (24-83)||(20095345-20095404)
[»] chr6 (3 HSPs)
chr6 (22-111)||(24576050-24576139)
chr6 (20-109)||(13487560-13487649)
chr6 (18-50)||(19691666-19691698)
[»] chr5 (2 HSPs)
chr5 (20-93)||(12859730-12859803)
chr5 (5-83)||(18282086-18282164)
[»] chr4 (1 HSPs)
chr4 (18-101)||(4746014-4746097)
[»] scaffold1149 (1 HSPs)
scaffold1149 (44-111)||(2505-2572)


Alignment Details
Target: chr8 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 18789475 - 18789389
Alignment:
Q  111 aagtcatgtcagctttgtcttcttctaaaattgtttctatcagactcatgaagcttgctttgcctttgatttttgttttgatgatgt 197  Q
    ||||||||||| |||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18789475 aagtcatgtcaactttgtcttcttctgaagttgtctctatcagactcatgaagcttgctttgcctttgatttttgttttgatgatgt 18789389  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 18789622 - 18789541
Alignment:
Q  29 caaagtttaaaatcaagttttgatcctcgaagaatgtatacaagagcatttggaaactagggaagctgaagatctgcatcaga 111  Q
    |||||| |||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  18789622 caaagtataaaatcaagttttgatcttggaagaatgtatacaagaacatttggaaactagggaagctgaa-aactgcatcaga 18789541  T

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Target: chr7 (Bit Score: 71; Significance: 2e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 10924488 - 10924402
Alignment:
Q  111 aagtcatgtcagctttgtcttcttctaaaattgtttctatcagactcatgaagcttgctttgcctttgatttttgttttgatgatgt 197  Q
    ||||||||||| |||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10924488 aagtcatgtcaactttgtcttcttctgaagttgtctctatcagactcatgaagcttgctttgcctttgatttttgttttgatgatgt 10924402  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 10924635 - 10924554
Alignment:
Q  29 caaagtttaaaatcaagttttgatcctcgaagaatgtatacaagagcatttggaaactagggaagctgaagatctgcatcaga 111  Q
    |||||| |||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  10924635 caaagtataaaatcaagttttgatcttggaagaatgtatacaagaacatttggaaactagggaagctgaa-aactgcatcaga 10924554  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 7560795 - 7560886
Alignment:
Q  18 agattaaaattcaaagtttaaaatcaagttttgatcctcgaagaatgtatacaagagcatttggaaactagggaagctgaagatctgcatca 109  Q
    |||||||||||||  || |||||||||| ||| ||||| ||||||  |||||||||||||||||||   || ||| ||||||||||||||||    
T  7560795 agattaaaattcatggtataaaatcaagctttaatcctggaagaaaatatacaagagcatttggaataaagagaaactgaagatctgcatca 7560886  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 20095404 - 20095345
Alignment:
Q  24 aaattcaaagtttaaaatcaagttttgatcctcgaagaatgtatacaagagcatttggaa 83  Q
    ||||||| ||| ||||||||||||||| | || |||||| ||||||||||||| ||||||    
T  20095404 aaattcatagtataaaatcaagttttggttctggaagaacgtatacaagagcaattggaa 20095345  T

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Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 24576139 - 24576050
Alignment:
Q  22 taaaattcaaagtttaaaatcaagttttgatcctcgaagaatgtatacaagagcatttggaaactagggaagctgaagatctgcatcaga 111  Q
    ||||||||| ||| |||||||||||||||||||| ||||||| ||||||| |||||||| |||||| | |||||||||||||||||||||    
T  24576139 taaaattcatagtataaaatcaagttttgatcctggaagaatatatacaaaagcatttgaaaactaagaaagctgaagatctgcatcaga 24576050  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 13487560 - 13487649
Alignment:
Q  20 attaaaattcaaagtttaaaatcaagttttgatcctcgaagaatgtatacaagagcatttggaaactagggaagctgaagatctgcatca 109  Q
    ||||||||||||||| || |||||||| |||||||  || |||| ||||||| | || |||||||| ||||||| |||||||||||||||    
T  13487560 attaaaattcaaagtatagaatcaagtcttgatccaggatgaatatatacaacaacagttggaaacaagggaagttgaagatctgcatca 13487649  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 19691666 - 19691698
Alignment:
Q  18 agattaaaattcaaagtttaaaatcaagttttg 50  Q
    ||||||||||||||||||| |||||||||||||    
T  19691666 agattaaaattcaaagttttaaatcaagttttg 19691698  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 12859730 - 12859803
Alignment:
Q  20 attaaaattcaaagtttaaaatcaagttttgatcctcgaagaatgtatacaagagcatttggaaactagggaag 93  Q
    ||||||||||||||| | || |||||||||||||| |||||||| ||||||| ||||||| |||| ||||||||    
T  12859730 attaaaattcaaagtattaattcaagttttgatccccgaagaatatatacaaaagcatttagaaattagggaag 12859803  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 18282164 - 18282086
Alignment:
Q  5 tgtgtaggagcagagattaaaattcaaagtttaaaatcaagttttgatcctcgaagaatgtatacaagagcatttggaa 83  Q
    ||||||||| || ||| ||||||| || || ||||||||||||||| | |||||||||||  |||||||||| ||||||    
T  18282164 tgtgtaggaccatagaataaaatttaatgtataaaatcaagttttggttctcgaagaatgattacaagagcaattggaa 18282086  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 4746014 - 4746097
Alignment:
Q  18 agattaaaattcaaagtttaaaatcaagttttgatcctcgaagaatgtatacaagagcatttggaaactagggaagctgaagat 101  Q
    |||||||||| || ||| |||||| ||||||||||| | ||||||| |||||||||| ||||| ||| ||||||| ||||||||    
T  4746014 agattaaaatccatagtataaaataaagttttgatcttggaagaatatatacaagagtatttgcaaaatagggaaactgaagat 4746097  T

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Target: scaffold1149 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 2505 - 2572
Alignment:
Q  44 agttttgatcctcgaagaatgtatacaagagcatttggaaactagggaagctgaagatctgcatcaga 111  Q
    |||||||||||  ||||||| |||||||||||| |||||||||||||||| | |||||| | ||||||    
T  2505 agttttgatccaggaagaatatatacaagagcacttggaaactagggaagttaaagatcagtatcaga 2572  T

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