View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4168_low_6 (Length: 471)
Name: NF4168_low_6
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4168_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 40471566 - 40471113
Alignment:
| Q |
1 |
ggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatgatggatataactggagaaaatatggacagaagcaagtaaaaggaagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40471566 |
ggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatgatggatataactggagaaaatatggacagaagcaagtaaaaggaagc |
40471467 |
T |
|
| Q |
101 |
gagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagattgcagaaattgtttata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40471466 |
gagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagattgcagaaattgtttata |
40471367 |
T |
|
| Q |
201 |
aaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgatttctgatggaatggttcaagataaagtatggag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40471366 |
aaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgatttctgatggaatggttcaagataaagtatggag |
40471267 |
T |
|
| Q |
301 |
taataatagtaatcagaatgaaaggaatgaaggaagaatagagaatcaagtcaaagcttcacagcctaatgattctgctctagaaacttcttgtggtcta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
40471266 |
taataatagtaatcagaatgaaaggaatgaaggaagaatagagaatcaagtcaaagcttcactgcctgatgattctgctctagaaacttcttgtggtcta |
40471167 |
T |
|
| Q |
401 |
agcggggaatgtgaggaaggaagcaaaggatttgaggcagaggaagatgactct |
454 |
Q |
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| T |
40471166 |
agtggggaatgtgaggaaggaagcaaaggatttgaggcagaggaagatgactct |
40471113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 26332607 - 26332543
Alignment:
| Q |
65 |
tggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcac |
129 |
Q |
| |
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|||||||||||||||||||| ||||| ||||||||||| |||| || ||||||||||||||||| |
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| T |
26332607 |
tggagaaaatatggacagaaacaagtgaaaggaagcgaaaatccgcgtagttattacaagtgcac |
26332543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 16863606 - 16863893
Alignment:
| Q |
1 |
ggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatgatggatataactggagaaaatatggacagaagcaagtaaaaggaagc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| | |
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| T |
16863606 |
ggaggaccaaaaagcattaccatccacaaataatgttgatagaccttcgtatgatggatataactagagaaaatatggaaagaag--------------c |
16863691 |
T |
|
| Q |
101 |
gagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagattgcagaaattgtttata |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16863692 |
gagtatcttcgaagttattacaagtgcacatatcctaattatccagttaaaaagaaagttgaaagatcattagatggtgagattgcagaaattgtttata |
16863791 |
T |
|
| Q |
201 |
aaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgatttctgatggaatggttcaagataaagtatggag |
300 |
Q |
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| T |
16863792 |
aaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgacttctgatggaatggttcaagataaagtatggag |
16863891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 2056300 - 2056406
Alignment:
| Q |
53 |
gatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaa |
152 |
Q |
| |
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||||||||||| |||||||||||||| || |||||||| || || |||||||| ||||||||||| |||||||| || || | |||||||||||||||| |
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| T |
2056300 |
gatggatataattggagaaaatatggccaaaagcaagttaagggtagcgagtaccctcgaagttactacaagtgtactcattcaaattgtccagttaaaa |
2056399 |
T |
|
| Q |
153 |
agaaagt |
159 |
Q |
| |
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||||||| |
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| T |
2056400 |
agaaagt |
2056406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 26967130 - 26967036
Alignment:
| Q |
51 |
atgatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtcca |
145 |
Q |
| |
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|||||||||| || ||||||||||||||||| || ||||| |||||||| || |||| |||||||||| || ||||| || |||||||||||| |
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| T |
26967130 |
atgatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaagttattataaatgcacttaccctaattgtcca |
26967036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 18876394 - 18876301
Alignment:
| Q |
51 |
atgatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtcc |
144 |
Q |
| |
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||||||| || |||||||| ||||| |||||||| || || ||||| ||||||| |||||||||||||||||||||||| ||||||| ||||| |
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| T |
18876394 |
atgatggctacaactggaggaaatacggacagaaacaggtgaaaggtagcgagtttcctcgaagttattacaagtgcacgcatcctaactgtcc |
18876301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 169
Target Start/End: Complemental strand, 31615430 - 31615312
Alignment:
| Q |
51 |
atgatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaa |
150 |
Q |
| |
|
|||||||||| || ||| ||||||||||||| |||||||| || ||||| || |||| ||||||| ||||| |||||||| ||||| ||||| || |
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| T |
31615430 |
atgatggatacaattggcgaaaatatggacaaaagcaagttaagggaagtgaaaatccgagaagttactacaaatgcacataccctaactgtcctacaaa |
31615331 |
T |
|
| Q |
151 |
aaagaaagttgaaagatca |
169 |
Q |
| |
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||||||||||| |||||| |
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| T |
31615330 |
gaagaaagttgagagatca |
31615312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 3669194 - 3669270
Alignment:
| Q |
53 |
gatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcac |
129 |
Q |
| |
|
|||||||| || ||||||||||||||| |||| ||||| |||||||| || |||| ||||||||||||||||||| |
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|
| T |
3669194 |
gatggatacaagtggagaaaatatggagagaaacaagtgaaaggaagtgaaaatccaagaagttattacaagtgcac |
3669270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 32110321 - 32110260
Alignment:
| Q |
62 |
aactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaa |
123 |
Q |
| |
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|||||||| || |||||||| || ||||| ||||| |||||| |||||||||||||||||| |
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|
| T |
32110321 |
aactggaggaagtatggacaaaaacaagtgaaaggttgcgagtttcctcgaagttattacaa |
32110260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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