View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4168_low_7 (Length: 467)
Name: NF4168_low_7
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4168_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Original strand, 3124201 - 3124643
Alignment:
| Q |
18 |
acaaaattttatgttagtaatttatatgaaaaaccgaaaattcacaatgtgcctcaaatcattgtttaaagctttttagtgaattcaatatacctgaata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3124201 |
acaaaattttatgttagtaatttatatgaaaaaccggaaattcacaatgtgcctcaaatcattgtttaaagctttttagtgaattcaatatacctgaata |
3124300 |
T |
|
| Q |
118 |
atgtaccatattggaacaataagaaactcaataacaagtagagatccaccaagaatccaatttgattctgttgttgaag---tgattggagaatgaataa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3124301 |
atgtaccatattggaacaataagaaactcaataacaagtagagatccaccaagaatccaatttgattctgttgttgaagaagtgattggagaatgaataa |
3124400 |
T |
|
| Q |
215 |
taggtggtgattgtgttgatggtgagggtatgattattggacccttataaagaacaactgcgagagcacctaatattgataccgtagaacccaggatttt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3124401 |
taggtggtgattgtgttgatggtgagggtatgattattggacccttataaagaacaactgtgagagcacctaatattgataccgtagaacccaggatttt |
3124500 |
T |
|
| Q |
315 |
tgcttgactgcttttccaccttaattttaccttctccatccttcatttaacaaccaacattgttcacaagacaatctattaaacagcgcaattgtatttt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3124501 |
tgcttgactgcttttccaccttaattttaccttctccatccttcatttaacaaccattattgttcacaagacaatctattaaacagcgcaattgtatttt |
3124600 |
T |
|
| Q |
415 |
atacatacttattcagacaaactccgggccactgctgatgatg |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3124601 |
atacatacttattcagacaaactccgggccactgccgatgatg |
3124643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 3557679 - 3557314
Alignment:
| Q |
18 |
acaaaattttatgttagtaatttatatgaaaaaccgaaaattcacaatgtgcctcaaatcattgtttaaagctttttagtgaattcaatatacctgaata |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||| ||||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
3557679 |
acaaaattttaagttagtaatttatatgaat---cgaaaattcataatgtgcttcaaatcattgcttagagcttttcagtgaattcaatatacctgaata |
3557583 |
T |
|
| Q |
118 |
atgtaccatattggaacaataagaaactcaataacaagtagagatccaccaagaatccaatttgattctgttgttgaag---tgattggagaatgaataa |
214 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3557582 |
atgtaccatattggaacaataagaatctcaataacaagtagagatccaccaagaatccaatttgattctgttgttgaagaagtgattggagaatgaataa |
3557483 |
T |
|
| Q |
215 |
taggtggtgattgtgttgatggtgagggtatgattattggacccttataaagaacaactgcgagagcacctaatattgataccgtagaacccaggatttt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
3557482 |
taggtggtgattgtgttgatggtgagggtatgattattggacccttataaagaacaactaggagtgcacctaatattgataccgtagaacccaagatttt |
3557383 |
T |
|
| Q |
315 |
tgcttgactgcttttccaccttaattttaccttctccatccttcatttaacaaccaacattgttcacaa |
383 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3557382 |
tgcttgactgcttttccatcttaattttaccttctccatccttcatttaacaaccattattgttcacaa |
3557314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University