View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4168_low_9 (Length: 414)
Name: NF4168_low_9
Description: NF4168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4168_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 1845822 - 1845608
Alignment:
| Q |
15 |
aataaagtcgaagaagataagacacgcctaaagtaattttttggctgaatctaaaagacgttccatgtaagcgtcacatatgcagtcaacttgctacctc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1845822 |
aataaagtcgaagaagataagacacgcctaaagtaattttttgacagaatctaaaagacgttccatgtaagcgtcacatatgcagtcaacttgctacctc |
1845723 |
T |
|
| Q |
115 |
atacttgcaatggaaaaaccatttgattgacaatctttaatttttagagatccttacaatttcaagtacga-------gattcacaagcaaatatatatt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
1845722 |
atacttgcaatggaaaaaccatttgattgacaatctttaatttttagagatccttacaatttcaagtacgagattggtgattcacaagaaaatatatatt |
1845623 |
T |
|
| Q |
208 |
tagtttctatcttat |
222 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1845622 |
tagtttctatcttat |
1845608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 254 - 399
Target Start/End: Complemental strand, 1845591 - 1845446
Alignment:
| Q |
254 |
aacaaatttgtcttagaatagaaacaatcaagattgtatacatttatacataaaaggtaaactagcttttccggacagaatataaccaaaaactaatgca |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1845591 |
aacaaatttgtcttagaatagaaacaatcaagattgtatacatttatacataaaaggtaaactagcttttccggacagaatataaccaaaaactaatgca |
1845492 |
T |
|
| Q |
354 |
aatcaaataaatgccaataacataaaggaattccaagagacatagg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1845491 |
aatcaaataaatgccaataacataaaggaattccaagagatatagg |
1845446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 257 - 399
Target Start/End: Complemental strand, 1820194 - 1820052
Alignment:
| Q |
257 |
aaatttgtcttagaatagaaacaatcaagattgtatacatttatacataaaaggtaaactagcttttccggacagaatataaccaaaaactaatgcaaat |
356 |
Q |
| |
|
||||||||||||||||| || ||||||| | | ||| ||||||| ||||||| ||||| | ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
1820194 |
aaatttgtcttagaatataagcaatcaatactatatgcatttatctataaaagataaacgaacttttccggacggagtataaccaaaaactaatgcaaat |
1820095 |
T |
|
| Q |
357 |
caaataaatgccaataacataaaggaattccaagagacatagg |
399 |
Q |
| |
|
||||||||| ||||||||||||||||||| | ||||| ||||| |
|
|
| T |
1820094 |
caaataaataccaataacataaaggaattgctagagatatagg |
1820052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 726016 - 726058
Alignment:
| Q |
261 |
ttgtcttagaatagaaacaatcaagattgtatacatttataca |
303 |
Q |
| |
|
||||||||||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
726016 |
ttgtcttagaatacaaacaatcaacattgaatacatttataca |
726058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University