View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4169_high_4 (Length: 268)
Name: NF4169_high_4
Description: NF4169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4169_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 13134494 - 13134231
Alignment:
| Q |
1 |
cttggaaggtggggattgggtatgtgcttgtgcagcctcaagatgagagagagattgatgaagtgaacgaaacttttcccagtggtagcaacatgagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13134494 |
cttggaaggtggggattgggtatgtgcttgtgcagcctcaagatgagagagagattgatgaagtgaacgaaacttttcccagtggtagcaacatgagaag |
13134395 |
T |
|
| Q |
101 |
ataccacttaagctgaagatgatgagcaagaggagagcagtacctagtgggaaaccgagggacggtcgagatgtgtctatttgaggtggggaaagatctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13134394 |
ataccacttaagctgaagatgatgagcaagaggagagcagtacctagtgggaaaccgagggacggtcgagatgtgtctatttgaggtggggaaagatctg |
13134295 |
T |
|
| Q |
201 |
ggctctccatcatcatcatatatacctt---taagctcttataactttgcttgttctgatgatg |
261 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13134294 |
ggctctccatcatcatcatatatacctttgataagctcttataactttgcttgttctgatgatg |
13134231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 30237169 - 30237300
Alignment:
| Q |
15 |
attgggtatgtgcttgtgcagcctcaagatgagagagagattgatgaagtgaacgaaacttttcccagtggtagcaacatgagaagataccacttaagct |
114 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30237169 |
attgagtatgtgcttgtggagactcaagatgagagagagattgatgaagtgaaagaaacttttcccagtggtagcaacatgagaagataccacttaagct |
30237268 |
T |
|
| Q |
115 |
gaagatgatgagcaagaggagagcagtaccta |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
30237269 |
gaagatgatgagcaagaggagagcagtaccta |
30237300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 30237302 - 30237337
Alignment:
| Q |
181 |
ttgaggtggggaaagatctgggctctccatcatcat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
30237302 |
ttgaggtggggaaagatctgggctctccatcatcat |
30237337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 28232814 - 28232718
Alignment:
| Q |
77 |
tcccagtggtagcaacatgagaagataccacttaagctgaagatgatgagcaagaggagagcagtacctagtgggaaaccgagggacggtcgagatg |
173 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||| ||||| || ||||||| |||||| || ||||| || | |||||||| ||||| |||||||||| |
|
|
| T |
28232814 |
tcccaatggtagcaacaagagaggataccactcaagctaaaaatgatgatcaagagaagggcagtgcccaaagggaaaccaagggatggtcgagatg |
28232718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University