View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4169_low_2 (Length: 391)
Name: NF4169_low_2
Description: NF4169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4169_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 21 - 259
Target Start/End: Complemental strand, 36724490 - 36724252
Alignment:
| Q |
21 |
aatgtgtatctgcaatgacgaacgagactttatttttacaaaaacatattggttctctcctctttgtgatgttgacataggggaagcatctgatttgcat |
120 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36724490 |
aatgtgtatctgcaatgacgcatgagactttatttttacaaaaacatattggttctctcctctttgtgatgttaacataggggaagcatctgatttgcat |
36724391 |
T |
|
| Q |
121 |
acggctttggagtggacatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagata |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36724390 |
acggctttggagtggacatcagaccttcaatttgataatacagatttttctctagactctgtgaaggatgtggatgctcttagaacaagcatataagata |
36724291 |
T |
|
| Q |
221 |
atggtgaatttagatgcattatagatgcttgtagacagt |
259 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36724290 |
gtagtgaatttagatgcattatagatgcttgtagacagt |
36724252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 59 - 301
Target Start/End: Original strand, 712072 - 712314
Alignment:
| Q |
59 |
caaaaacatattggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggacatcagaccttcaatttgataa |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | | ||| |||||| ||||||| ||||||||| |||||||||||||||| |
|
|
| T |
712072 |
caaaaacatattggttctctcctctttgtgatgttgacataggggaaggagtttcttttcatacgactttggaatggacatcataccttcaatttgataa |
712171 |
T |
|
| Q |
159 |
tacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattatagatgcttgtagacag |
258 |
Q |
| |
|
| ||||||| ||||||||| | ||| | |||||||||| |||||||| | || |||||| | |||||||| |||| |||||| ||| |||||| || |
|
|
| T |
712172 |
tgtagattttgctctagactctaagaaggttgtggatgcttttagaacatgtgtagaagatagttgtgaatttggatgtattatacttgcatgtagatag |
712271 |
T |
|
| Q |
259 |
ttatttcatagtagatttcaaaactctcaaattgagtttaata |
301 |
Q |
| |
|
|| ||||| | ||||||| |||||||||| |||||||||||| |
|
|
| T |
712272 |
ttgtttcaaaatagattttaaaactctcatgttgagtttaata |
712314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 246 - 377
Target Start/End: Complemental strand, 36723895 - 36723764
Alignment:
| Q |
246 |
tgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaataaagtcaggctaatgaggttgctcatgagttagctcagatagtcc |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||| |||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
36723895 |
tgcttgtagacagttatttcatagtagatttcaaaactcttaagttgagtttaatagagtcagactaatgggattgctcacgagttagctcagatagtcc |
36723796 |
T |
|
| Q |
346 |
cacataatactaactcccacacctatgatgat |
377 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| |
|
|
| T |
36723795 |
cacataatactagctctcacacctatgatgat |
36723764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 46 - 379
Target Start/End: Original strand, 717269 - 717603
Alignment:
| Q |
46 |
gactttatttttacaaaaacatattggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggacatcagacc |
145 |
Q |
| |
|
|||||| || || |||||| || ||||||||||||||||||||||||| |||||||||||| | || ||| |||||| |||| ||||||||||| ||| |
|
|
| T |
717269 |
gactttgttcttgcaaaaaaatcttggttctctcctctttgtgatgttaacataggggaagtagttggtttacatacgattttgaagtggacatcacacc |
717368 |
T |
|
| Q |
146 |
ttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattataga |
245 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| | ||| | ||| |||||| |||||| | | || ||||| | |||||||| |||| ||||||| |
|
|
| T |
717369 |
ttcaatttgataatgtagatttagctctagactctaagaaggttgttgatgcttttagaagatgtgtaggagatagtagtgaatttggatgtattatagt |
717468 |
T |
|
| Q |
246 |
tgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata-aagtcaggctaatgaggttgctcatgagttagctcagatagtc |
344 |
Q |
| |
|
|| |||||||| ||||| || |||||||||||||||||||| |||||||||||| || || ||||||| | | || | ||||||||||| |||| | |
|
|
| T |
717469 |
tgaatgtagacaattattccaaagtagatttcaaaactctcatgttgagtttaataggagacaagctaatgggatcacttacgagttagctcatatagcc |
717568 |
T |
|
| Q |
345 |
ccacataatactaactcccacacctatgatgatgt |
379 |
Q |
| |
|
||||||||| ||| || | ||| ||||||||||| |
|
|
| T |
717569 |
ccacataatgctagatctctcacttatgatgatgt |
717603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 111 - 301
Target Start/End: Original strand, 14541058 - 14541248
Alignment:
| Q |
111 |
tgatttgcatacggctttggagtggacatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| | ||| |||||||||| |||||||| |
|
|
| T |
14541058 |
tgatttgcatacggctttggagtggacatcataccttcaatttgataatgtatatttttctctagactcttagaagattgtggatgcttttagaacatat |
14541157 |
T |
|
| Q |
211 |
atataagataatggtgaatttagatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
301 |
Q |
| |
|
|| |||||||| || |||||||||| |||||||||| ||||||||| | ||||| |||| ||| ||||||||| ||||||||||||| |
|
|
| T |
14541158 |
gtagaagataatagtaaatttagatgtattatagatgtttgtagacaagtgtttcaaagtaattttaaaaactctcgtattgagtttaata |
14541248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 2087632 - 2087537
Alignment:
| Q |
69 |
ttggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggacatcagaccttcaatttgataatacagatttt |
168 |
Q |
| |
|
||||||||||||||||||||||||||| || || |||||| ||||||||| ||||| | |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
2087632 |
ttggttctctcctctttgtgatgttgatattggagaagcag----tttgcatacaactttgcaatggacatcagaccttcaatttgataaaatagatttt |
2087537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 36474006 - 36474068
Alignment:
| Q |
69 |
ttggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttgga |
131 |
Q |
| |
|
|||||| || ||||||||||||||||| |||||||||||| | ||||||||||||| |||| |
|
|
| T |
36474006 |
ttggttttcccctctttgtgatgttgatataggggaagcaatgggtttgcatacggctctgga |
36474068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University