View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4169_low_3 (Length: 385)
Name: NF4169_low_3
Description: NF4169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4169_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 10383028 - 10382673
Alignment:
| Q |
11 |
cacagacactatcaagttttgtatacggatgtggacaggataatcaaggtttgtttggaaggaccgacggtataattggtctagccaacaatgaactctc |
110 |
Q |
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| T |
10383028 |
cacagacactatcaagttttgtatacggatgtggacaggataatcaaggtttgtttggaaggaccgacggtataattggtctagccaacaatgaactctc |
10382929 |
T |
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| Q |
111 |
gatgctttcacaattgtctggaaaatatggaaacgccttttcctattgtcttcctacatcattttctacaccaaactctcccaaggaaggtttcttatcc |
210 |
Q |
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| T |
10382928 |
gatgctttcacaattgtctggaaaatatggaaacgccttttcctattgtcttcctacatcattttctacaccaaactctcccaaggaaggtttcttatcc |
10382829 |
T |
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| Q |
211 |
attggaacctcatcattgacaccgtcttcttcatacaagttcactcctttgcttaagaatccaaacaatcctagcttatattttatagatttggaatcaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10382828 |
attggaacctcatcattgacaccgtcttcttcatacaagttcactcctttgcttaagaatccaaacaatcctagcttatattttatagatttggaatcaa |
10382729 |
T |
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| Q |
311 |
tcactgtggcaggaagacctttaggagttgcagcatcaagttataaggttcctact |
366 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10382728 |
ttactgtggcaggaagacctttaggagttgcagcatcaagttataaggttcctact |
10382673 |
T |
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