View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4169_low_4 (Length: 383)

Name: NF4169_low_4
Description: NF4169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4169_low_4
NF4169_low_4
[»] chr8 (39 HSPs)
chr8 (1-182)||(30344406-30344588)
chr8 (95-180)||(28940714-28940799)
chr8 (135-182)||(2680234-2680281)
chr8 (244-295)||(32574478-32574529)
chr8 (244-290)||(27015385-27015431)
chr8 (136-182)||(32569575-32569621)
chr8 (6-93)||(24848004-24848091)
chr8 (135-181)||(4631640-4631686)
chr8 (135-181)||(18375557-18375603)
chr8 (135-181)||(36778476-36778522)
chr8 (135-181)||(41158640-41158686)
chr8 (135-180)||(40586443-40586488)
chr8 (135-182)||(8160418-8160465)
chr8 (135-182)||(8763009-8763056)
chr8 (135-182)||(24055837-24055884)
chr8 (139-181)||(2961008-2961050)
chr8 (135-181)||(7391318-7391364)
chr8 (139-181)||(27272686-27272728)
chr8 (135-180)||(1945184-1945229)
chr8 (146-182)||(12249910-12249946)
chr8 (146-182)||(23626054-23626090)
chr8 (138-182)||(27273877-27273921)
chr8 (146-182)||(39445261-39445297)
chr8 (146-182)||(41908017-41908053)
chr8 (247-286)||(4638747-4638786)
chr8 (135-182)||(25361511-25361558)
chr8 (135-182)||(25833996-25834043)
chr8 (141-180)||(27244398-27244437)
chr8 (135-182)||(41978855-41978902)
chr8 (141-184)||(42060658-42060701)
chr8 (146-180)||(29434280-29434314)
chr8 (141-182)||(6300487-6300528)
chr8 (139-180)||(11697110-11697151)
chr8 (135-180)||(25345992-25346037)
chr8 (137-182)||(36597310-36597355)
chr8 (141-182)||(37029917-37029958)
chr8 (138-182)||(5836239-5836283)
chr8 (138-182)||(22332003-22332047)
chr8 (138-182)||(30827035-30827079)
[»] chr6 (25 HSPs)
chr6 (1-183)||(18985189-18985371)
chr6 (244-295)||(1619790-1619841)
chr6 (247-297)||(19962466-19962516)
chr6 (135-182)||(11681668-11681715)
chr6 (135-182)||(24447791-24447838)
chr6 (135-181)||(1363219-1363265)
chr6 (135-180)||(4110057-4110102)
chr6 (138-182)||(6966235-6966279)
chr6 (139-182)||(18389166-18389209)
chr6 (139-182)||(33319049-33319092)
chr6 (135-182)||(35160119-35160166)
chr6 (143-181)||(875535-875573)
chr6 (135-181)||(15043827-15043873)
chr6 (136-176)||(1615103-1615143)
chr6 (247-295)||(2634772-2634820)
chr6 (146-181)||(1932347-1932382)
chr6 (138-181)||(2522023-2522066)
chr6 (139-182)||(5753125-5753168)
chr6 (139-181)||(2624721-2624763)
chr6 (135-181)||(9978707-9978753)
chr6 (135-180)||(1222381-1222426)
chr6 (141-181)||(13456734-13456774)
chr6 (146-178)||(29737644-29737676)
chr6 (136-180)||(33979182-33979226)
chr6 (137-181)||(35041995-35042039)
[»] chr5 (32 HSPs)
chr5 (1-180)||(23920146-23920325)
chr5 (6-93)||(39952592-39952679)
chr5 (99-183)||(13596879-13596963)
chr5 (135-182)||(1685046-1685093)
chr5 (135-181)||(34719454-34719500)
chr5 (135-181)||(36884780-36884826)
chr5 (135-180)||(3086433-3086478)
chr5 (135-180)||(25695539-25695584)
chr5 (135-182)||(752054-752101)
chr5 (135-178)||(14387898-14387941)
chr5 (139-182)||(36366123-36366166)
chr5 (139-181)||(7863528-7863570)
chr5 (137-183)||(20350823-20350869)
chr5 (139-181)||(22602634-22602676)
chr5 (135-181)||(43136273-43136319)
chr5 (138-183)||(4883070-4883115)
chr5 (135-180)||(41693138-41693183)
chr5 (139-180)||(42819330-42819371)
chr5 (139-183)||(32977099-32977143)
chr5 (138-182)||(34373667-34373711)
chr5 (146-181)||(5620643-5620678)
chr5 (146-181)||(9702716-9702751)
chr5 (146-181)||(9809820-9809855)
chr5 (138-181)||(17997459-17997502)
chr5 (137-180)||(19395652-19395695)
chr5 (146-180)||(12702061-12702095)
chr5 (147-181)||(38041490-38041524)
chr5 (144-181)||(4802095-4802132)
chr5 (135-183)||(30181407-30181458)
chr5 (138-183)||(38935347-38935392)
chr5 (138-182)||(10511663-10511707)
chr5 (150-182)||(33931125-33931157)
[»] scaffold0001 (2 HSPs)
scaffold0001 (6-87)||(12763-12844)
scaffold0001 (135-179)||(12951-12995)
[»] chr7 (32 HSPs)
chr7 (10-93)||(25350593-25350676)
chr7 (10-93)||(25356287-25356370)
chr7 (135-184)||(691285-691334)
chr7 (135-183)||(21669229-21669277)
chr7 (135-182)||(39278234-39278281)
chr7 (135-181)||(31896813-31896859)
chr7 (135-181)||(39647981-39648027)
chr7 (135-178)||(9151415-9151458)
chr7 (98-178)||(25731089-25731169)
chr7 (139-181)||(12960607-12960649)
chr7 (136-182)||(17817716-17817762)
chr7 (135-181)||(24682277-24682323)
chr7 (135-181)||(27732952-27732998)
chr7 (135-180)||(4850449-4850494)
chr7 (135-180)||(17172890-17172935)
chr7 (135-180)||(44806574-44806619)
chr7 (143-183)||(272588-272628)
chr7 (146-182)||(9226019-9226055)
chr7 (147-183)||(49023321-49023357)
chr7 (146-181)||(38434277-38434312)
chr7 (135-180)||(7854965-7855011)
chr7 (146-180)||(15595432-15595466)
chr7 (146-180)||(23476587-23476621)
chr7 (139-181)||(27840514-27840556)
chr7 (135-181)||(29469214-29469260)
chr7 (136-181)||(19049240-19049285)
chr7 (141-182)||(47573331-47573372)
chr7 (146-182)||(11834955-11834991)
chr7 (247-295)||(12807766-12807814)
chr7 (146-182)||(21597942-21597978)
chr7 (146-182)||(42996948-42996984)
chr7 (135-182)||(48527407-48527457)
[»] chr1 (29 HSPs)
chr1 (98-182)||(29693347-29693431)
chr1 (135-182)||(4893964-4894011)
chr1 (135-182)||(10763584-10763631)
chr1 (135-182)||(42682588-42682635)
chr1 (135-181)||(29840689-29840735)
chr1 (135-181)||(38896811-38896857)
chr1 (135-181)||(52037390-52037436)
chr1 (135-182)||(1375978-1376025)
chr1 (139-182)||(3929746-3929789)
chr1 (135-182)||(19320419-19320466)
chr1 (135-182)||(22194466-22194513)
chr1 (139-182)||(28565428-28565471)
chr1 (135-182)||(29184476-29184523)
chr1 (143-182)||(48183174-48183213)
chr1 (135-181)||(24289200-24289246)
chr1 (135-181)||(28573156-28573202)
chr1 (135-181)||(33074231-33074277)
chr1 (135-180)||(33363568-33363613)
chr1 (140-181)||(47137860-47137901)
chr1 (146-182)||(28631818-28631854)
chr1 (147-182)||(23909714-23909749)
chr1 (137-180)||(24294867-24294910)
chr1 (138-181)||(44407293-44407336)
chr1 (139-181)||(20767556-20767598)
chr1 (138-180)||(31620598-31620640)
chr1 (135-181)||(46623376-46623422)
chr1 (146-183)||(13662116-13662153)
chr1 (150-182)||(45005717-45005749)
chr1 (141-181)||(50394966-50395006)
[»] chr4 (40 HSPs)
chr4 (244-297)||(35534411-35534464)
chr4 (135-180)||(5483030-5483075)
chr4 (135-182)||(35707656-35707703)
chr4 (135-181)||(2118187-2118233)
chr4 (135-180)||(574177-574222)
chr4 (135-180)||(3759276-3759321)
chr4 (135-180)||(12680630-12680675)
chr4 (135-180)||(39713496-39713541)
chr4 (138-181)||(5759341-5759384)
chr4 (135-182)||(9887269-9887316)
chr4 (143-182)||(27892642-27892681)
chr4 (135-182)||(29713820-29713867)
chr4 (135-182)||(39404590-39404637)
chr4 (135-181)||(8964830-8964876)
chr4 (139-181)||(15650485-15650527)
chr4 (135-181)||(16653191-16653237)
chr4 (135-181)||(30527587-30527633)
chr4 (139-180)||(43014591-43014632)
chr4 (138-182)||(2777221-2777265)
chr4 (138-182)||(22115352-22115396)
chr4 (138-182)||(41983530-41983574)
chr4 (247-294)||(1975481-1975528)
chr4 (138-181)||(5271601-5271644)
chr4 (137-180)||(8532222-8532265)
chr4 (139-182)||(19591081-19591124)
chr4 (138-181)||(21353963-21354006)
chr4 (135-182)||(37352097-37352144)
chr4 (135-182)||(37356996-37357043)
chr4 (135-182)||(51348063-51348110)
chr4 (138-180)||(14828803-14828845)
chr4 (143-180)||(1975398-1975435)
chr4 (139-180)||(3839095-3839136)
chr4 (141-182)||(15521071-15521112)
chr4 (139-180)||(16895950-16895991)
chr4 (137-182)||(28974008-28974053)
chr4 (135-181)||(36741797-36741845)
chr4 (139-180)||(56541766-56541807)
chr4 (138-182)||(23479823-23479867)
chr4 (135-171)||(24549419-24549455)
chr4 (138-182)||(38009207-38009251)
[»] chr3 (29 HSPs)
chr3 (247-297)||(44198153-44198203)
chr3 (135-183)||(41053800-41053848)
chr3 (135-182)||(8396762-8396809)
chr3 (135-182)||(22477902-22477949)
chr3 (135-181)||(4137399-4137445)
chr3 (135-181)||(35860998-35861044)
chr3 (138-181)||(18688673-18688716)
chr3 (135-182)||(26776432-26776479)
chr3 (135-178)||(42614239-42614282)
chr3 (136-182)||(5240985-5241031)
chr3 (135-181)||(11950990-11951036)
chr3 (135-181)||(26100777-26100823)
chr3 (139-180)||(188736-188777)
chr3 (137-182)||(50742294-50742339)
chr3 (134-174)||(12001433-12001473)
chr3 (146-181)||(21165930-21165965)
chr3 (146-180)||(22522278-22522312)
chr3 (147-181)||(22759056-22759090)
chr3 (135-181)||(24560111-24560157)
chr3 (138-180)||(39576533-39576575)
chr3 (135-181)||(55290396-55290442)
chr3 (146-183)||(16496384-16496421)
chr3 (139-180)||(30766506-30766547)
chr3 (135-180)||(52843181-52843226)
chr3 (138-183)||(52852741-52852786)
chr3 (139-182)||(15315271-15315315)
chr3 (146-182)||(19893178-19893214)
chr3 (137-181)||(52462214-52462258)
chr3 (150-182)||(54934745-54934777)
[»] chr2 (23 HSPs)
chr2 (135-180)||(45003662-45003707)
chr2 (139-182)||(30922096-30922139)
chr2 (135-182)||(42782670-42782717)
chr2 (135-181)||(4289027-4289073)
chr2 (139-183)||(7364780-7364824)
chr2 (135-182)||(15084296-15084343)
chr2 (135-182)||(28609949-28609996)
chr2 (135-181)||(9542629-9542675)
chr2 (135-180)||(9916707-9916752)
chr2 (135-180)||(25123429-25123474)
chr2 (143-180)||(25124044-25124081)
chr2 (138-183)||(26828459-26828504)
chr2 (135-180)||(44800651-44800696)
chr2 (138-182)||(33908191-33908235)
chr2 (147-182)||(1691425-1691460)
chr2 (138-181)||(5253294-5253337)
chr2 (135-178)||(19488272-19488315)
chr2 (138-180)||(11707573-11707615)
chr2 (135-181)||(19484616-19484662)
chr2 (137-179)||(25573918-25573960)
chr2 (141-182)||(6342727-6342768)
chr2 (135-183)||(10874396-10874444)
chr2 (150-182)||(37224026-37224058)
[»] scaffold0069 (1 HSPs)
scaffold0069 (135-182)||(14644-14691)
[»] scaffold0057 (1 HSPs)
scaffold0057 (135-181)||(17400-17446)
[»] scaffold0249 (1 HSPs)
scaffold0249 (139-183)||(24916-24960)
[»] scaffold0051 (2 HSPs)
scaffold0051 (135-183)||(55556-55604)
scaffold0051 (146-180)||(61720-61754)
[»] scaffold0484 (1 HSPs)
scaffold0484 (135-182)||(8174-8221)
[»] scaffold0381 (1 HSPs)
scaffold0381 (135-182)||(11228-11275)
[»] scaffold0103 (2 HSPs)
scaffold0103 (139-182)||(13023-13066)
scaffold0103 (247-295)||(5189-5237)
[»] scaffold0009 (1 HSPs)
scaffold0009 (135-181)||(139571-139617)
[»] scaffold0242 (1 HSPs)
scaffold0242 (138-182)||(2707-2751)
[»] scaffold0088 (1 HSPs)
scaffold0088 (146-182)||(52691-52727)
[»] scaffold0171 (1 HSPs)
scaffold0171 (138-181)||(29638-29681)
[»] scaffold0047 (1 HSPs)
scaffold0047 (138-180)||(25614-25656)
[»] scaffold0027 (1 HSPs)
scaffold0027 (139-181)||(143213-143255)
[»] scaffold0005 (1 HSPs)
scaffold0005 (138-180)||(10864-10906)
[»] scaffold0006 (2 HSPs)
scaffold0006 (146-183)||(151878-151915)
scaffold0006 (146-182)||(64401-64437)


Alignment Details
Target: chr8 (Bit Score: 126; Significance: 7e-65; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 30344406 - 30344588
Alignment:
Q  1 tacgcaatgacaataattgttatgctatcttttatgccatatcttagaccatgcatcacaaatattcggattatgtgaccttcgttcacaaatatctgta 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30344406 tacgcaatgacaataattgttatgctatcttttatgccatgtcttagaccatgcatcacaaatattcggattatgtgaccttcattcacaaatatctgta 30344505  T
Q  101 atttgaacatctctcctttagaact-annnnnnngaaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||||||||||||||| || |       ||||||||||||||||||| |||| |||||||  |||||||||||||||    
T  30344506 atttgaacatctctcctttagagctaatttttttgaaaaatacgtaattcaactcgtgcgaagcacatgtttgtaactagttt 30344588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 28940799 - 28940714
Alignment:
Q  95 tctgtaatttgaacatctctcctttagaactannnnnnngaaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||||||||||||||||||||||| |        |||| |||||||||||||||||| ||||||||||||||||||||||    
T  28940799 tctgtaatttgaacatctctcctttagaacaaattttttaaaaagtacgtaattcaacccgtgcgaagcacgggtttgtaactagt 28940714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 2680281 - 2680234
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2680281 aaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagttt 2680234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 295
Target Start/End: Complemental strand, 32574529 - 32574478
Alignment:
Q  244 accattttgcccttataggggtattttggtaaattagtaaatgttgcctttc 295  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  32574529 accattttgcccttataggggtattttggtaaattagtaattgctgcctttc 32574478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 27015431 - 27015385
Alignment:
Q  244 accattttgcccttataggggtattttggtaaattagtaaatgttgc 290  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  27015431 accattttgcccttatgggggtattttggtaaattagtaaatgttgc 27015385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 32569621 - 32569575
Alignment:
Q  136 aaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  32569621 aaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagttt 32569575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 24848091 - 24848004
Alignment:
Q  6 aatgacaataattgttatgctatcttttatgccatatcttagaccatgcatcacaaatattcggattatgtgaccttcgttcacaaat 93  Q
    |||||||||  |||||||| ||||||| |||  ||  |||||||||||||||  |||||||||||||||| ||||||||||| |||||    
T  24848091 aatgacaatggttgttatgttatctttgatgttatgccttagaccatgcatcgtaaatattcggattatgcgaccttcgttctcaaat 24848004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 4631686 - 4631640
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||    
T  4631686 aaaaataggtaattcaacccgtgcgaagcacgggtttgtaactagtt 4631640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 18375603 - 18375557
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  18375603 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 18375557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 36778476 - 36778522
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  36778476 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 36778522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 41158640 - 41158686
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  41158640 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 41158686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 40586488 - 40586443
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  40586488 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagt 40586443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 8160465 - 8160418
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  8160465 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 8160418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 8763009 - 8763056
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  8763009 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 8763056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 24055837 - 24055884
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  24055837 aaaaatacgttattcaacctgtgcgaagcacgggtttgtaactagttt 24055884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 2961050 - 2961008
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  2961050 atacgttattcaacccgtgcgaagcacgggtttgtaactagtt 2961008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 7391318 - 7391364
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||| |||| |||||||||||| |||||||||||||||||||||||    
T  7391318 aaaaaaacgttattcaacccgtgcgaagcacgggtttgtaactagtt 7391364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 27272686 - 27272728
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  27272686 atacgttattcaacccgtgcgaagcacgggtttgtaactagtt 27272728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 1945184 - 1945229
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||    
T  1945184 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagt 1945229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 12249946 - 12249910
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||||| ||||||||||||||||||||||||    
T  12249946 attcaacccgtgcgaagcacgggtttgtaactagttt 12249910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 23626090 - 23626054
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||||| ||||||||||||||||||||||||    
T  23626090 attcaacccgtgcgaagcacgggtttgtaactagttt 23626054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 27273877 - 27273921
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||    
T  27273877 aatacgttattgaacccgtgcgaagcacgggtttgtaactagttt 27273921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 39445261 - 39445297
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||||| ||||||||||||||||||||||||    
T  39445261 attcaacccgtgcgaagcacgggtttgtaactagttt 39445297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 41908017 - 41908053
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||||| ||||||||||||||||||||||||    
T  41908017 attcaacccgtgcgaagcacgggtttgtaactagttt 41908053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 4638786 - 4638747
Alignment:
Q  247 attttgcccttataggggtattttggtaaattagtaaatg 286  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  4638786 attttgcccttataggggtatttaggtaaattagaaaatg 4638747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 25361511 - 25361558
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||| || ||||| |||||| ||||||||||||||||||||||||    
T  25361511 aaaaatatgttattcatcccgtgtgaagcacgggtttgtaactagttt 25361558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 25834043 - 25833996
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| |||||| |||||  |||||||||||||||||||||||    
T  25834043 aaaaatacgttattcaatccgtgcaaagcacgggtttgtaactagttt 25833996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 27244437 - 27244398
Alignment:
Q  141 acgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  27244437 acgtaattcaacccgtgcgaagcatgggtttgtaactagt 27244398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 41978855 - 41978902
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| |||||||||||| |||||||| |||| ||||||||||    
T  41978855 aaaaatacgttattcaacccgtgcgaagcacgagtttctaactagttt 41978902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 42060701 - 42060658
Alignment:
Q  141 acgtaattcaacccgtgggaagcacgggtttgtaactagtttgg 184  Q
    |||| ||| |||||||| ||||||||||||||||||||||||||    
T  42060701 acgttattgaacccgtgcgaagcacgggtttgtaactagtttgg 42060658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 29434280 - 29434314
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||||| ||||||||||||||||||||||    
T  29434280 attcaacccgtgtgaagcacgggtttgtaactagt 29434314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 6300528 - 6300487
Alignment:
Q  141 acgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||| ||| |||||||| ||||||||||||||||||||||||    
T  6300528 acgttattgaacccgtgcgaagcacgggtttgtaactagttt 6300487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 11697110 - 11697151
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||| ||||||||||||  |||||||||||||||||||||    
T  11697110 atacgttattcaacccgtgcaaagcacgggtttgtaactagt 11697151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 25345992 - 25346037
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||| |||||| ||||| |||||| |||||||||||||||    
T  25345992 aaaaatacgttattcaatccgtgcgaagcatgggtttgtaactagt 25346037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 36597355 - 36597310
Alignment:
Q  137 aaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||| || ||| |||||||| ||||||||||||||||||||||||    
T  36597355 aaatatgtcattgaacccgtgcgaagcacgggtttgtaactagttt 36597310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 37029917 - 37029958
Alignment:
Q  141 acgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||| ||| |||||||| ||||||||||||||||||||||||    
T  37029917 acgttattgaacccgtgcgaagcacgggtttgtaactagttt 37029958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 5836239 - 5836283
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||| ||| |||||||| ||||||| ||||||||||||||||    
T  5836239 aatacgttattgaacccgtgcgaagcacaggtttgtaactagttt 5836283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 22332047 - 22332003
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||| ||| |||||||| ||||||||||| ||||||||||||    
T  22332047 aatacgttattgaacccgtgcgaagcacgggtctgtaactagttt 22332003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 30827035 - 30827079
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||| ||| |||||||  ||||||||||||||||||||||||    
T  30827035 aatacgttattgaacccgtacgaagcacgggtttgtaactagttt 30827079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 7e-65; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 18985371 - 18985189
Alignment:
Q  1 tacgcaatgacaataattgttatgctatcttttatgccatatcttagaccatgcatcacaaatattcggattatgtgaccttcgttcacaaatatctgta 100  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18985371 tacgcaatgacaataattgttatgctatctttaatgccatgtcttagaccatgcatcacaaatattcggattatgtgaccttcgttcacaaatatctgta 18985272  T
Q  101 atttgaacatctctcctttagaactannnnnnngaaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 183  Q
    |||||||||| |||||||||||  ||        ||||| | ||||||||||||||| |||||||||||||||||||||||||    
T  18985271 atttgaacatatctcctttagagttaattttttaaaaaacatgtaattcaacccgtgcgaagcacgggtttgtaactagtttg 18985189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 295
Target Start/End: Complemental strand, 1619841 - 1619790
Alignment:
Q  244 accattttgcccttataggggtattttggtaaattagtaaatgttgcctttc 295  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1619841 accattttgcccttataggggtattttggtaaattagtaattgttgcctttc 1619790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 19962466 - 19962516
Alignment:
Q  247 attttgcccttataggggtattttggtaaattagtaaatgttgcctttccc 297  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19962466 attttgcccttataggggtattttggtaaattagtaaatgctgcctttccc 19962516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 11681715 - 11681668
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||    
T  11681715 aaaagtacgtaattcaacccgtgcgaagcacgggtttgtaactagttt 11681668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 24447791 - 24447838
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  24447791 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 24447838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 1363219 - 1363265
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||    
T  1363219 aaaaatatgtaattcaacccgtgcgaagcacgggtttgtaactagtt 1363265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 4110057 - 4110102
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  4110057 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagt 4110102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 6966279 - 6966235
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||    
T  6966279 aatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 6966235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 18389209 - 18389166
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  18389209 atacgttattcaacccgtgcgaagcacgggtttgtaactagttt 18389166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 33319049 - 33319092
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  33319049 atacgttattcaacccgtgcgaagcacgggtttgtaactagttt 33319092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 35160119 - 35160166
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  35160119 aaaaatacgttattcaacccgtgcgaagcacggatttgtaactagttt 35160166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 875535 - 875573
Alignment:
Q  143 gtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  875535 gtaattcaacccgtgcgaagcacgggtttgtaactagtt 875573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 15043873 - 15043827
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| |||||| ||||| |||||||||||||||||||||||    
T  15043873 aaaaatacgttattcaatccgtgcgaagcacgggtttgtaactagtt 15043827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 1615143 - 1615103
Alignment:
Q  136 aaaatacgtaattcaacccgtgggaagcacgggtttgtaac 176  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  1615143 aaaatacgtaattcaacccgtgtgaagcatgggtttgtaac 1615103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 2634820 - 2634772
Alignment:
Q  247 attttgcccttataggggtattttggtaaattagtaaatgttgcctttc 295  Q
    |||||||||||| | ||||||||||||||||||||||||  ||||||||    
T  2634820 attttgcccttagaagggtattttggtaaattagtaaatcatgcctttc 2634772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 181
Target Start/End: Original strand, 1932347 - 1932382
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||||| |||||||||||||||||||||||    
T  1932347 attcaacccgtgcgaagcacgggtttgtaactagtt 1932382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 2522023 - 2522066
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||    
T  2522023 aatacgttattgaacccgtgcgaagcacgggtttgtaactagtt 2522066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 5753168 - 5753125
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||| |||||||||||| |||| |||||||||||||||||||    
T  5753168 atacgttattcaacccgtgcgaagtacgggtttgtaactagttt 5753125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 2624763 - 2624721
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||| |||||||||||| || ||||||||||||||||||||    
T  2624763 atacgttattcaacccgtgcgatgcacgggtttgtaactagtt 2624721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 9978753 - 9978707
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||||| || |||||||||||| |||||||| ||||||||||||||    
T  9978753 aaaaatatgttattcaacccgtgcgaagcacgagtttgtaactagtt 9978707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 1222381 - 1222426
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||| |||||| || || ||||||||||||||||||||||    
T  1222381 aaaaatacgttattcaatccatgcgaagcacgggtttgtaactagt 1222426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 13456774 - 13456734
Alignment:
Q  141 acgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||| ||| |||||||| |||||||||||||||||||||||    
T  13456774 acgttattgaacccgtgcgaagcacgggtttgtaactagtt 13456734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 29737644 - 29737676
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaacta 178  Q
    |||||||||||| ||||||||||||||||||||    
T  29737644 attcaacccgtgcgaagcacgggtttgtaacta 29737676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 33979182 - 33979226
Alignment:
Q  136 aaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    ||||||||| ||| |||||||| ||| ||||||||||||||||||    
T  33979182 aaaatacgttattaaacccgtgcgaaacacgggtttgtaactagt 33979226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 35041995 - 35042039
Alignment:
Q  137 aaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||| ||| |||||||| ||| |||||||||||||||||||    
T  35041995 aaatacgttattgaacccgtgcgaaacacgggtttgtaactagtt 35042039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 23920146 - 23920325
Alignment:
Q  1 tacgcaatgacaataattgttatgctatcttttatgccatatcttagaccatgcatcacaaatattcggattatgtgaccttcgttcacaaatatctgta 100  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23920146 tacgcaatgacaataattgttatgctatctttaatgccatgtcttagaccatgcatcacaaatattcggattatgtgaccttcgttcacaaatatctgta 23920245  T
Q  101 atttgaacatctctcctttagaactannnnnnngaaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||| |||||||||||  ||        ||||| | ||||||||||||||| ||||||||||||||||||||||    
T  23920246 atttgaacatatctcctttagagttaattttttaaaaaacatgtaattcaacccgtgcgaagcacgggtttgtaactagt 23920325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 39952592 - 39952679
Alignment:
Q  6 aatgacaataattgttatgctatcttttatgccatatcttagaccatgcatcacaaatattcggattatgtgaccttcgttcacaaat 93  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  39952592 aatgacaataattgttatgctatcttttatgccatgctttagaccatgcatcacaaatattcggattatgcgaccttcgttctcaaat 39952679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 13596879 - 13596963
Alignment:
Q  99 taatttgaacatctctcctttagaactannnnnnngaaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 183  Q
    |||||||||||||||||||||||| | |        ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13596879 taatttgaacatctctcctttagagcaatttttttaaaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagtttg 13596963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 1685093 - 1685046
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  1685093 aaaaatacataattcaacccgtgcgaagcacgggtttgtaactagttt 1685046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 34719454 - 34719500
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  34719454 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 34719500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 36884826 - 36884780
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  36884826 aaaaatacgttattcaacccgtgtgaagcacgggtttgtaactagtt 36884780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 3086478 - 3086433
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  3086478 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagt 3086433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 25695584 - 25695539
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  25695584 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagt 25695539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 752101 - 752054
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  752101 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 752054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 14387941 - 14387898
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaacta 178  Q
    |||||||||| |||||||||||| ||||||||||||||||||||    
T  14387941 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaacta 14387898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 36366166 - 36366123
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  36366166 atacgttattcaacccgtgcgaagcacgggtttgtaactagttt 36366123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 7863570 - 7863528
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  7863570 atacgttattcaacccgtgcgaagcacgggtttgtaactagtt 7863528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 20350823 - 20350869
Alignment:
Q  137 aaatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 183  Q
    |||||||| ||| |||||||| |||||||||||||||||||||||||    
T  20350823 aaatacgttattgaacccgtgcgaagcacgggtttgtaactagtttg 20350869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 22602676 - 22602634
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  22602676 atacgttattcaacccgtgcgaagcacgggtttgtaactagtt 22602634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 43136319 - 43136273
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||||    
T  43136319 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagtt 43136273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 4883070 - 4883115
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 183  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||    
T  4883070 aatacgttattgaacccgtgcgaagcacgggtttgtaactagtttg 4883115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 41693138 - 41693183
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||| |||||||||||| |||||||| |||||||||||||    
T  41693138 aaaaatacgttattcaacccgtgcgaagcacgagtttgtaactagt 41693183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 42819371 - 42819330
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||| |||||||||||| ||||||||||||||||||||||    
T  42819371 atacgttattcaacccgtgcgaagcacgggtttgtaactagt 42819330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 32977143 - 32977099
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 183  Q
    |||||| |||||||||||| ||||||| |||||||||||||||||    
T  32977143 atacgttattcaacccgtgcgaagcaccggtttgtaactagtttg 32977099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 34373711 - 34373667
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||    
T  34373711 aatacgttattaaacccgtgcgaagcacgggtttgtaactagttt 34373667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 181
Target Start/End: Complemental strand, 5620678 - 5620643
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||||| |||||||||||||||||||||||    
T  5620678 attcaacccgtgcgaagcacgggtttgtaactagtt 5620643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 181
Target Start/End: Original strand, 9702716 - 9702751
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||||| |||||||||||||||||||||||    
T  9702716 attcaacccgtgcgaagcacgggtttgtaactagtt 9702751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 181
Target Start/End: Complemental strand, 9809855 - 9809820
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||||| |||||||||||||||||||||||    
T  9809855 attcaacccgtgcgaagcacgggtttgtaactagtt 9809820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 17997459 - 17997502
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||    
T  17997459 aatacgttattgaacccgtgcgaagcacgggtttgtaactagtt 17997502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 19395652 - 19395695
Alignment:
Q  137 aaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||    
T  19395652 aaatacgttattgaacccgtgcgaagcacgggtttgtaactagt 19395695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 12702095 - 12702061
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||||| ||||||||||||||||||||||    
T  12702095 attcaacccgtgcgaagcacgggtttgtaactagt 12702061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 181
Target Start/End: Complemental strand, 38041524 - 38041490
Alignment:
Q  147 ttcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||||||||| |||||||||||||||||||||||    
T  38041524 ttcaacccgtgcgaagcacgggtttgtaactagtt 38041490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 4802132 - 4802095
Alignment:
Q  144 taattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  4802132 taatacaacccgtgcgaagcacgggtttgtaactagtt 4802095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 30181407 - 30181458
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaa---gcacgggtttgtaactagtttg 183  Q
    |||||||||| |||||||||||| |||   ||||||||||||||||||||||    
T  30181407 aaaaatacgttattcaacccgtgcgaattcgcacgggtttgtaactagtttg 30181458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 38935347 - 38935392
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 183  Q
    ||||||| ||| |||||||  |||||||||||||||||||||||||    
T  38935347 aatacgttattgaacccgtacgaagcacgggtttgtaactagtttg 38935392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 10511707 - 10511663
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||| ||| |||||||| |||||||| |||||||||||||||    
T  10511707 aatacgttattgaacccgtgtgaagcacgagtttgtaactagttt 10511663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 33931125 - 33931157
Alignment:
Q  150 aacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||| ||||||||||||||||||||||||    
T  33931125 aacccgtgcgaagcacgggtttgtaactagttt 33931157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 12763 - 12844
Alignment:
Q  6 aatgacaataattgttatgctatcttttatgccatatcttagaccatgcatcacaaatattcggattatgtgaccttcgttc 87  Q
    ||||||||| ||||||||| |||||||||||||||  |||||| |||||||||||||||||||||||||| |||||||||||    
T  12763 aatgacaatgattgttatgttatcttttatgccatgccttagatcatgcatcacaaatattcggattatgcgaccttcgttc 12844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 12951 - 12995
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactag 179  Q
    |||| |||||||||||||||||| ||||||| |||||||||||||    
T  12951 aaaattacgtaattcaacccgtgcgaagcacaggtttgtaactag 12995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 25350676 - 25350593
Alignment:
Q  10 acaataattgttatgctatcttttatgccatatcttagaccatgcatcacaaatattcggattatgtgaccttcgttcacaaat 93  Q
    ||||| ||||||||| ||| ||||||| |||  ||||||||||||||||||||||||||||||||| | ||||||||| |||||    
T  25350676 acaatgattgttatgttattttttatgtcatgccttagaccatgcatcacaaatattcggattatgcgtccttcgttctcaaat 25350593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 25356370 - 25356287
Alignment:
Q  10 acaataattgttatgctatcttttatgccatatcttagaccatgcatcacaaatattcggattatgtgaccttcgttcacaaat 93  Q
    ||||| ||||||||| ||| ||||||| |||  ||||||||||||||||||||||||||||||||| | ||||||||| |||||    
T  25356370 acaatgattgttatgttattttttatgtcatgccttagaccatgcatcacaaatattcggattatgcgtccttcgttctcaaat 25356287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 691285 - 691334
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtttgg 184  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  691285 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtttgg 691334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 21669277 - 21669229
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 183  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||    
T  21669277 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtttg 21669229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 39278234 - 39278281
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  39278234 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 39278281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 31896859 - 31896813
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  31896859 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 31896813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 39648027 - 39647981
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  39648027 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 39647981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 9151415 - 9151458
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaacta 178  Q
    |||||||||| |||||||||||| ||||||||||||||||||||    
T  9151415 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaacta 9151458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 25731089 - 25731169
Alignment:
Q  98 gtaatttgaacatctctcctttagaactannnnnnngaaaaatacgtaattcaacccgtgggaagcacgggtttgtaacta 178  Q
    ||||||||||||||||||||||||| | |        |||||||||||||| |||||||| |||||||| |||||||||||    
T  25731089 gtaatttgaacatctctcctttagagcaatttttttaaaaaatacgtaatttaacccgtgcgaagcacgagtttgtaacta 25731169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 12960607 - 12960649
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  12960607 atacgttattcaacccgtgcgaagcacgggtttgtaactagtt 12960649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 17817716 - 17817762
Alignment:
Q  136 aaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||| |||| |||||||||||| ||||||||||||||||||||||||    
T  17817716 aaaacacgttattcaacccgtgcgaagcacgggtttgtaactagttt 17817762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 24682323 - 24682277
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||||    
T  24682323 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagtt 24682277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 27732998 - 27732952
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| |||||||| ||| |||||||||||||||||||||||    
T  27732998 aaaaatacgttattcaaccagtgcgaagcacgggtttgtaactagtt 27732952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 4850449 - 4850494
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    ||||||| || |||||||||||| ||||||||||||||||||||||    
T  4850449 aaaaatatgttattcaacccgtgtgaagcacgggtttgtaactagt 4850494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 17172890 - 17172935
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||| |||||| ||||| ||||||||||||||||||||||    
T  17172890 aaaaatacgttattcaatccgtgcgaagcacgggtttgtaactagt 17172935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 44806574 - 44806619
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  44806574 aaaaatacgtaattcaaccagtgcgaagcacggatttgtaactagt 44806619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 272628 - 272588
Alignment:
Q  143 gtaattcaacccgtgggaagcacgggtttgtaactagtttg 183  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  272628 gtaattcaacccgtgcgaagcacggatttgtaactagtttg 272588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 9226055 - 9226019
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||||| ||||||||||||||||||||||||    
T  9226055 attcaacccgtgcgaagcacgggtttgtaactagttt 9226019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 49023321 - 49023357
Alignment:
Q  147 ttcaacccgtgggaagcacgggtttgtaactagtttg 183  Q
    ||||||||||| |||||||||||||||||||||||||    
T  49023321 ttcaacccgtgcgaagcacgggtttgtaactagtttg 49023357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 181
Target Start/End: Complemental strand, 38434312 - 38434277
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||||| |||||||||||||||||||||||    
T  38434312 attcaacccgtgcgaagcacgggtttgtaactagtt 38434277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 7855011 - 7854965
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaag-cacgggtttgtaactagt 180  Q
    |||||||||| |||||||||||| |||| ||||||||||||||||||    
T  7855011 aaaaatacgttattcaacccgtgcgaagccacgggtttgtaactagt 7854965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 15595432 - 15595466
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||||| ||||||||||||||||||||||    
T  15595432 attcaacccgtgcgaagcacgggtttgtaactagt 15595466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 23476621 - 23476587
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||||| ||||||||||||||||||||||    
T  23476621 attcaacccgtgtgaagcacgggtttgtaactagt 23476587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 27840514 - 27840556
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||| ||||||||||||  ||||||||||||||||||||||    
T  27840514 atacgttattcaacccgtgcaaagcacgggtttgtaactagtt 27840556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 29469214 - 29469260
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| ||||||||||||  |||||||||||| |||||||||    
T  29469214 aaaaatacgttattcaacccgtgcaaagcacgggtttataactagtt 29469260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 19049285 - 19049240
Alignment:
Q  136 aaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||| |||| |||||||||||| |||| ||||||||||||||||||    
T  19049285 aaaacacgttattcaacccgtgcgaagtacgggtttgtaactagtt 19049240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 47573372 - 47573331
Alignment:
Q  141 acgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||| ||| |||||||| ||||||||||||||||||||||||    
T  47573372 acgttattgaacccgtgcgaagcacgggtttgtaactagttt 47573331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 11834991 - 11834955
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||||| |||||||||||||| |||||||||    
T  11834991 attcaacccgtgcgaagcacgggtttggaactagttt 11834955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 12807766 - 12807814
Alignment:
Q  247 attttgcccttataggggtattttggtaaattagtaaatgttgcctttc 295  Q
    ||||||||||||   ||||||||||||||||||||||||  ||||||||    
T  12807766 attttgcccttaggagggtattttggtaaattagtaaatcatgcctttc 12807814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 21597978 - 21597942
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||||| |||||||||||||| |||||||||    
T  21597978 attcaacccgtgcgaagcacgggtttggaactagttt 21597942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 42996948 - 42996984
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  42996948 attcaacctgtgcgaagcacgggtttgtaactagttt 42996984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 48527457 - 48527407
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaa---gcacgggtttgtaactagttt 182  Q
    |||||||||| |||||||||||| |||   |||||||||||||||||||||    
T  48527457 aaaaatacgttattcaacccgtgcgaattcgcacgggtttgtaactagttt 48527407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 29693347 - 29693431
Alignment:
Q  98 gtaatttgaacatctctcctttagaactannnnnnngaaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||||||||||||| ||||||||| |        ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29693347 gtaatttgaacatctcttctttagaacaaattttttaaaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagttt 29693431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 4893964 - 4894011
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  4893964 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 4894011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 10763584 - 10763631
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  10763584 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 10763631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 42682588 - 42682635
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  42682588 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 42682635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 29840735 - 29840689
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  29840735 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 29840689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 38896811 - 38896857
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  38896811 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 38896857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 52037436 - 52037390
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||    
T  52037436 aaaaatacataattcaacccgtgcgaagcacgggtttgtaactagtt 52037390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 1375978 - 1376025
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  1375978 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 1376025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 3929789 - 3929746
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  3929789 atacgttattcaacccgtgcgaagcacgggtttgtaactagttt 3929746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 19320466 - 19320419
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  19320466 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 19320419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 22194513 - 22194466
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  22194513 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 22194466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 28565471 - 28565428
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  28565471 atacgttattcaacccgtgcgaagcacgggtttgtaactagttt 28565428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 29184523 - 29184476
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  29184523 aaaaatacgttattcaatccgtgcgaagcacgggtttgtaactagttt 29184476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 48183213 - 48183174
Alignment:
Q  143 gtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  48183213 gtaattcaacccgtgcgaagcacgggtttgtaactagttt 48183174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 24289246 - 24289200
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||||    
T  24289246 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagtt 24289200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 28573156 - 28573202
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||||    
T  28573156 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagtt 28573202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 33074277 - 33074231
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||||    
T  33074277 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagtt 33074231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 33363568 - 33363613
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||| |||||| ||||| ||||||||||||||||||||||    
T  33363568 aaaaatacgttattcaatccgtgcgaagcacgggtttgtaactagt 33363613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 47137860 - 47137901
Alignment:
Q  140 tacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  47137860 tacgttattcaacccgtgcgaagcacgggtttgtaactagtt 47137901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 28631818 - 28631854
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||||| ||||||||||||||||||||||||    
T  28631818 attcaacccgtgcgaagcacgggtttgtaactagttt 28631854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 182
Target Start/End: Complemental strand, 23909749 - 23909714
Alignment:
Q  147 ttcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||||||| ||||||||||||||||||||||||    
T  23909749 ttcaacccgtgcgaagcacgggtttgtaactagttt 23909714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 24294867 - 24294910
Alignment:
Q  137 aaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||    
T  24294867 aaatacgttattgaacccgtgcgaagcacgggtttgtaactagt 24294910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 44407293 - 44407336
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||    
T  44407293 aatacgttattgaacccgtgcgaagcacgggtttgtaactagtt 44407336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 20767556 - 20767598
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||| |||||| ||||| |||||||||||||||||||||||    
T  20767556 atacgttattcaagccgtgcgaagcacgggtttgtaactagtt 20767598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 31620598 - 31620640
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||    
T  31620598 aatacgttattgaacccgtgcgaagcacgggtttgtaactagt 31620640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 46623422 - 46623376
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| ||||||| |||| |||||||||| ||||||||||||    
T  46623422 aaaaatacgttattcaactcgtgcgaagcacgggattgtaactagtt 46623376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 13662153 - 13662116
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagtttg 183  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  13662153 attcaacccgtgcgaagcacgggtttgtaactaatttg 13662116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 45005717 - 45005749
Alignment:
Q  150 aacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||| ||||||||||||||||||||||||    
T  45005717 aacccgtgcgaagcacgggtttgtaactagttt 45005749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 50395006 - 50394966
Alignment:
Q  141 acgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||| ||| |||||||| |||||||||||||||||||||||    
T  50395006 acgttattgaacccgtgcgaagcacgggtttgtaactagtt 50394966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 35534411 - 35534464
Alignment:
Q  244 accattttgcccttataggggtattttggtaaattagtaaatgttgcctttccc 297  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  35534411 accattttgcctttataggggtattttggtaaattagtaaatgttgcatttccc 35534464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 5483030 - 5483075
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  5483030 aaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagt 5483075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 35707703 - 35707656
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  35707703 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 35707656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 2118187 - 2118233
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  2118187 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 2118233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 574222 - 574177
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  574222 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagt 574177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 3759276 - 3759321
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  3759276 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagt 3759321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 12680675 - 12680630
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  12680675 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagt 12680630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 39713541 - 39713496
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  39713541 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagt 39713496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 5759341 - 5759384
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||||| |||||||||||| |||||||||||||||||||||||    
T  5759341 aatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 5759384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 9887316 - 9887269
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  9887316 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 9887269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 27892681 - 27892642
Alignment:
Q  143 gtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  27892681 gtaattcaacccgtgcgaagcacgggtttgtaactagttt 27892642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 29713820 - 29713867
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  29713820 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 29713867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 39404637 - 39404590
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||| || |||||||||||| ||||||||||||||||||||||||    
T  39404637 aaaaatatgttattcaacccgtgcgaagcacgggtttgtaactagttt 39404590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 8964830 - 8964876
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||||    
T  8964830 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagtt 8964876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 15650527 - 15650485
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  15650527 atacgttattcaacccgtgcgaagcacgggtttgtaactagtt 15650485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 16653191 - 16653237
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||||    
T  16653191 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagtt 16653237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 30527633 - 30527587
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| |||||||||||  |||||||||||||||||||||||    
T  30527633 aaaaatacgttattcaacccgtacgaagcacgggtttgtaactagtt 30527587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 43014632 - 43014591
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||| |||||||||||| ||||||||||||||||||||||    
T  43014632 atacgttattcaacccgtgcgaagcacgggtttgtaactagt 43014591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 2777221 - 2777265
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||    
T  2777221 aatacgttattgaacccgtgcgaagcacgggtttgtaactagttt 2777265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 22115396 - 22115352
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||| ||| || ||||||||||||||||||||||||||||||    
T  22115396 aatacgttattgaatccgtgggaagcacgggtttgtaactagttt 22115352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 41983574 - 41983530
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||    
T  41983574 aatacgttattgaacccgtgcgaagcacgggtttgtaactagttt 41983530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 294
Target Start/End: Complemental strand, 1975528 - 1975481
Alignment:
Q  247 attttgcccttataggggtattttggtaaattagtaaatgttgccttt 294  Q
    ||||||||||||| ||| ||||||||||||||||||| || |||||||    
T  1975528 attttgcccttatggggttattttggtaaattagtaattgctgccttt 1975481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 5271644 - 5271601
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||    
T  5271644 aatacgttattgaacccgtgcgaagcacgggtttgtaactagtt 5271601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 8532222 - 8532265
Alignment:
Q  137 aaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||| |||||||||||| ||||||||| ||||||||||||    
T  8532222 aaatacgttattcaacccgtgcgaagcacggatttgtaactagt 8532265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 19591081 - 19591124
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||    
T  19591081 atacgttattaaacccgtgcgaagcacgggtttgtaactagttt 19591124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 21353963 - 21354006
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||    
T  21353963 aatacgttattgaacccgtgcgaagcacgggtttgtaactagtt 21354006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 37352097 - 37352144
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| |||||||| |||  |||||||||||||||||||||||    
T  37352097 aaaaatacgttattcaacctgtgcaaagcacgggtttgtaactagttt 37352144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 37356996 - 37357043
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| |||||||| |||  |||||||||||||||||||||||    
T  37356996 aaaaatacgttattcaacctgtgcaaagcacgggtttgtaactagttt 37357043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 51348063 - 51348110
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||| | |||||||||||| ||| ||||||||||||||||||||    
T  51348063 aaaaatacattattcaacccgtgcgaaacacgggtttgtaactagttt 51348110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 14828845 - 14828803
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||    
T  14828845 aatacgttattgaacccgtgcgaagcacgggtttgtaactagt 14828803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 180
Target Start/End: Original strand, 1975398 - 1975435
Alignment:
Q  143 gtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  1975398 gtaattcaacccgtgcgaagcatgggtttgtaactagt 1975435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 3839136 - 3839095
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||| ||||||||| || ||||||||||||||||||||||    
T  3839136 atacgttattcaacccttgcgaagcacgggtttgtaactagt 3839095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 15521071 - 15521112
Alignment:
Q  141 acgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||| ||| |||||||| ||||||||||||||||||||||||    
T  15521071 acgttattgaacccgtgcgaagcacgggtttgtaactagttt 15521112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 16895950 - 16895991
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||| |||||||||||| |||||| |||||||||||||||    
T  16895950 atacgttattcaacccgtgcgaagcatgggtttgtaactagt 16895991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 28974008 - 28974053
Alignment:
Q  137 aaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||| || ||| |||||||| ||||||||||||||||||||||||    
T  28974008 aaatatgttattgaacccgtgcgaagcacgggtttgtaactagttt 28974053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 36741845 - 36741797
Alignment:
Q  135 aaaaatacgtaattcaacccgtggga--agcacgggtttgtaactagtt 181  Q
    ||||||||||||||||||||||| ||   ||||||||||||||||||||    
T  36741845 aaaaatacgtaattcaacccgtgcgagtcgcacgggtttgtaactagtt 36741797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 56541766 - 56541807
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||| |||||||||||| ||||||| ||||||||||||||    
T  56541766 atacgttattcaacccgtgcgaagcacaggtttgtaactagt 56541807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 23479823 - 23479867
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||| ||| ||| |||| ||||||||||||||||||||||||    
T  23479823 aatacgttattgaactcgtgcgaagcacgggtttgtaactagttt 23479867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 24549419 - 24549455
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggttt 171  Q
    |||||||||| |||||||||||| |||||||||||||    
T  24549419 aaaaatacgttattcaacccgtgcgaagcacgggttt 24549455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 38009207 - 38009251
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||| ||| |||||||| |||||||| |||||||||||||||    
T  38009207 aatacgttattgaacccgtgtgaagcacgtgtttgtaactagttt 38009251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 44198203 - 44198153
Alignment:
Q  247 attttgcccttataggggtattttggtaaattagtaaatgttgcctttccc 297  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  44198203 attttgcccttatagaggtattttggtaaattagtaaatgctgcctttccc 44198153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 41053800 - 41053848
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 183  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  41053800 aaaaatatgtaattcaacccgtgcgaagcacgggtttgtaactagtttg 41053848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 8396762 - 8396809
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  8396762 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 8396809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 22477902 - 22477949
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  22477902 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 22477949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 4137445 - 4137399
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  4137445 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 4137399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 35860998 - 35861044
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  35860998 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 35861044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 18688673 - 18688716
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||||| |||||||||||| |||||||||||||||||||||||    
T  18688673 aatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 18688716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 26776479 - 26776432
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||| || |||||||||||| ||||||||||||||||||||||||    
T  26776479 aaaaatatgttattcaacccgtgcgaagcacgggtttgtaactagttt 26776432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 42614282 - 42614239
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaacta 178  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||    
T  42614282 aaaaatatgtaattcaacccgtgcgaagcacgggtttgtaacta 42614239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 5240985 - 5241031
Alignment:
Q  136 aaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||| |||| |||||||||||| ||||||||||||||||||||||||    
T  5240985 aaaacacgttattcaacccgtgcgaagcacgggtttgtaactagttt 5241031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 11951036 - 11950990
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| |||||||||||| |||||| ||||||||||||||||    
T  11951036 aaaaatacgttattcaacccgtgcgaagcatgggtttgtaactagtt 11950990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 26100823 - 26100777
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||| | |||||||||||| |||||||||||||||||||||||    
T  26100823 aaaaatacattattcaacccgtgcgaagcacgggtttgtaactagtt 26100777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 188736 - 188777
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||| |||||||||||| ||||||||||||||||||||||    
T  188736 atacgttattcaacccgtgcgaagcacgggtttgtaactagt 188777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 50742294 - 50742339
Alignment:
Q  137 aaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||||    
T  50742294 aaatacgttattgaacccgtgcgaagcacgggtttgtaactagttt 50742339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 12001473 - 12001433
Alignment:
Q  134 gaaaaatacgtaattcaacccgtgggaagcacgggtttgta 174  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  12001473 gaaaaatacgttattcaacccgtgcgaagcacgggtttgta 12001433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 181
Target Start/End: Complemental strand, 21165965 - 21165930
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||||| |||||||||||||||||||||||    
T  21165965 attcaacccgtgcgaagcacgggtttgtaactagtt 21165930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 22522278 - 22522312
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||||| ||||||||||||||||||||||    
T  22522278 attcaacccgtgcgaagcacgggtttgtaactagt 22522312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 181
Target Start/End: Complemental strand, 22759090 - 22759056
Alignment:
Q  147 ttcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||||||||| |||||||||||||||||||||||    
T  22759090 ttcaacccgtgcgaagcacgggtttgtaactagtt 22759056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 24560157 - 24560111
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| ||||||||||||  || |||||||||||||||||||    
T  24560157 aaaaatacgttattcaacccgtgtaaaacacgggtttgtaactagtt 24560111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 39576533 - 39576575
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    ||||||| ||||||| |||| ||||||||||||||||||||||    
T  39576533 aatacgttattcaactcgtgcgaagcacgggtttgtaactagt 39576575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 55290442 - 55290396
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| |||||||||||  ||||||| |||||||||||||||    
T  55290442 aaaaatacgttattcaacccgtacgaagcacaggtttgtaactagtt 55290396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 16496384 - 16496421
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagtttg 183  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  16496384 attcaacccgtgcgaagcacgggtttgtaactaatttg 16496421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 30766506 - 30766547
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||| |||||||||||| ||||||| ||||||||||||||    
T  30766506 atacgttattcaacccgtgcgaagcacaggtttgtaactagt 30766547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 52843181 - 52843226
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||| | ||||||| |||| ||||||||||||||||||||||    
T  52843181 aaaaatacattattcaactcgtgcgaagcacgggtttgtaactagt 52843226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 52852786 - 52852741
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 183  Q
    ||||||| ||| |||||||| |||||||| ||||||||||||||||    
T  52852786 aatacgttattgaacccgtgcgaagcacgagtttgtaactagtttg 52852741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 15315315 - 15315271
Alignment:
Q  139 atacgtaattcaacccgtgggaa-gcacgggtttgtaactagttt 182  Q
    |||||| |||||||||||| ||| |||||||||||||||||||||    
T  15315315 atacgttattcaacccgtgcgaaagcacgggtttgtaactagttt 15315271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 19893214 - 19893178
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||||  ||||||||||||||||||||||||    
T  19893214 attcaacccgtatgaagcacgggtttgtaactagttt 19893178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 52462258 - 52462214
Alignment:
Q  137 aaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||| ||| |||||||| ||||||||| |||||||||||||    
T  52462258 aaatacgttattgaacccgtgcgaagcacggatttgtaactagtt 52462214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 54934745 - 54934777
Alignment:
Q  150 aacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||| ||||||||||||||||||||||||    
T  54934745 aacccgtgcgaagcacgggtttgtaactagttt 54934777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 45003707 - 45003662
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  45003707 aaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagt 45003662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 30922139 - 30922096
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  30922139 atacgtaattcaacccgtgtgaagcacgggtttgtaactagttt 30922096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 42782670 - 42782717
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  42782670 aaaaatacgttattcaacccgtgtgaagcacgggtttgtaactagttt 42782717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 4289073 - 4289027
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  4289073 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 4289027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 7364780 - 7364824
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 183  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  7364780 atacgttattcaacccgtgcgaagcacgggtttgtaactagtttg 7364824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 15084343 - 15084296
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||| ||||||||||||||| |||||||| |||||||||||||||    
T  15084343 aaaaatatgtaattcaacccgtgcgaagcacgagtttgtaactagttt 15084296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 28609949 - 28609996
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  28609949 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 28609996  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 9542675 - 9542629
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||||| || |||||||||||| |||||||||||||||||||||||    
T  9542675 aaaaatatgttattcaacccgtgcgaagcacgggtttgtaactagtt 9542629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 9916752 - 9916707
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||| |||||||| ||| ||||||||||||||||||||||    
T  9916752 aaaaatacgttattcaacctgtgcgaagcacgggtttgtaactagt 9916707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 25123474 - 25123429
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||||||||| |||||| |||||||||||||||| |||||    
T  25123474 aaaaatacgtaattcagcccgtgcgaagcacgggtttgtagctagt 25123429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 25124081 - 25124044
Alignment:
Q  143 gtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  25124081 gtaattcaacccgtgcgaagcacgggtttgtaactagt 25124044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 26828459 - 26828504
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 183  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||    
T  26828459 aatacgttattgaacccgtgcgaagcacgggtttgtaactagtttg 26828504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 44800651 - 44800696
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||||||||||| |||| |||||||| |||||||||||||    
T  44800651 aaaaatacgtaattcaactcgtgcgaagcacgagtttgtaactagt 44800696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 33908191 - 33908235
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||    
T  33908191 aatacgttattgaacccgtgcgaagcacgggtttgtaactagttt 33908235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 182
Target Start/End: Complemental strand, 1691460 - 1691425
Alignment:
Q  147 ttcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||||||| ||||||||||||||||||||||||    
T  1691460 ttcaacccgtgcgaagcacgggtttgtaactagttt 1691425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 5253294 - 5253337
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||    
T  5253294 aatacgttattgaacccgtgcgaagcacgggtttgtaactagtt 5253337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 19488272 - 19488315
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaacta 178  Q
    |||||||||| |||||||||||| ||| ||||||||||||||||    
T  19488272 aaaaatacgttattcaacccgtgcgaaacacgggtttgtaacta 19488315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 11707573 - 11707615
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||    
T  11707573 aatacgttattgaacccgtgcgaagcacgggtttgtaactagt 11707615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 19484662 - 19484616
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||||| || |||||||||||| |||||||||||||| ||||||||    
T  19484662 aaaaatatgttattcaacccgtgcgaagcacgggtttgcaactagtt 19484616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 25573960 - 25573918
Alignment:
Q  137 aaatacgtaattcaacccgtgggaagcacgggtttgtaactag 179  Q
    ||||||||||||  ||||||| |||||||||||||||||||||    
T  25573960 aaatacgtaatttcacccgtgcgaagcacgggtttgtaactag 25573918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 6342768 - 6342727
Alignment:
Q  141 acgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||| ||| |||||||| ||||||||||||||||||||||||    
T  6342768 acgttattaaacccgtgcgaagcacgggtttgtaactagttt 6342727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 10874444 - 10874396
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 183  Q
    ||||||| || ||||||| |||| |||||||||| ||||||||||||||    
T  10874444 aaaaatatgttattcaactcgtgcgaagcacgggattgtaactagtttg 10874396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 37224026 - 37224058
Alignment:
Q  150 aacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||| ||||||||||||||||||||||||    
T  37224026 aacccgtgcgaagcacgggtttgtaactagttt 37224058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 14644 - 14691
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  14644 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 14691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 17446 - 17400
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  17446 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 17400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 24960 - 24916
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 183  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  24960 atacgttattcaacccgtgcgaagcacgggtttgtaactagtttg 24916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 55556 - 55604
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 183  Q
    |||||||||| ||||||| |||| |||||||||||||||||||||||||    
T  55556 aaaaatacgttattcaactcgtgcgaagcacgggtttgtaactagtttg 55604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 61720 - 61754
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagt 180  Q
    |||||||||||| ||||||||||||||||||||||    
T  61720 attcaacccgtgcgaagcacgggtttgtaactagt 61754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 8221 - 8174
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||| || |||||||||||| ||||||||||||||||||||||||    
T  8221 aaaaatatgttattcaacccgtgcgaagcacgggtttgtaactagttt 8174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 11228 - 11275
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  11228 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 11275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 13023 - 13066
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  13023 atacgttattcaacccgtgcgaagcacgggtttgtaactagttt 13066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 5189 - 5237
Alignment:
Q  247 attttgcccttataggggtattttggtaaattagtaaatgttgcctttc 295  Q
    |||||||||||| | ||||||||||||||||||||||||  ||||||||    
T  5189 attttgcccttagaagggtattttggtaaattagtaaatcatgcctttc 5237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 139571 - 139617
Alignment:
Q  135 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||||    
T  139571 aaaaatacgtaattcaacccgtgcgaaacacgagtttgtaactagtt 139617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 2751 - 2707
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||    
T  2751 aatacgttattgaacccgtgtgaagcacgggtttgtaactagttt 2707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 52727 - 52691
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||||| ||||||||||||||||||||||||    
T  52727 attcaacccgtgcgaagcacgggtttgtaactagttt 52691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 29681 - 29638
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||    
T  29681 aatacgttattgaacccgtgcgaagcacgggtttgtaactagtt 29638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 25656 - 25614
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||    
T  25656 aatacgttattgaacccgtgcgaagcacgggtttgtaactagt 25614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 143255 - 143213
Alignment:
Q  139 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 181  Q
    |||||| |||||||| ||| |||||||||||||||||||||||    
T  143255 atacgttattcaacctgtgcgaagcacgggtttgtaactagtt 143213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 10864 - 10906
Alignment:
Q  138 aatacgtaattcaacccgtgggaagcacgggtttgtaactagt 180  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||    
T  10864 aatacgttattgaacccgtgcgaagcacgggtttgtaactagt 10906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 151915 - 151878
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagtttg 183  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  151915 attcaacccgtgcgaagcacgggtttgtaactaatttg 151878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 64437 - 64401
Alignment:
Q  146 attcaacccgtgggaagcacgggtttgtaactagttt 182  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  64437 attcaacccgtgcgaagcacgggtttataactagttt 64401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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