View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4170_high_5 (Length: 314)
Name: NF4170_high_5
Description: NF4170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4170_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 10082475 - 10082773
Alignment:
| Q |
1 |
aaattaatagccccacacctataatgtatgttttgcaaccaacatcccacattgaatagcaccaaggtaggacacaagctgcaacacatacaccatatgt |
100 |
Q |
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| T |
10082475 |
aaattaatagcaccacaccaataatgtatgttttgcaaccaacatcccacattgaatagcaccaaggtaggacacaagctgcaacacatgcaccatatgt |
10082574 |
T |
|
| Q |
101 |
tgcagtgcttttaaggtttgctaagtatcgtaccaccatacaaatggtctagagtgatnnnnnnnttatttccgtagatctcatgtttatgttgaaaatt |
200 |
Q |
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| T |
10082575 |
tgcagtgcttttaaggtttgctaagtattgtaccaccatacaaatggtctatagtgataaaaaaattatttcggtagatctcatgtttatgttgaaaatt |
10082674 |
T |
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| Q |
201 |
ccattagagcaaaatatcacgacttgacaaatttgaggctattatctcgcatcatattcgattttatgcacaagaaatttccagccttaaagtgagaat |
299 |
Q |
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| T |
10082675 |
ccattagagcacaatatcacgacttgacaaatttgaggctattatctcgcatcatattcgattttatgcacaagaaatttccagccttaaagtgagaat |
10082773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 33 - 295
Target Start/End: Original strand, 10098280 - 10098538
Alignment:
| Q |
33 |
ttgcaaccaacatcccacattgaatagcaccaaggtaggacacaagctgcaacacatacaccatatgttgcagtgcttttaaggtttgctaagtatcgta |
132 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| |||||||||| | | |
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| T |
10098280 |
ttgcaaccaacatcccaccatgaatagcaccaaggtaggacacaagctgcaacacgtacaccata-gttgcagtgcttttatggtctgctaagtattgaa |
10098378 |
T |
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| Q |
133 |
ccaccatacaaatggtctagagtgatnnnnnnnttatttccgtagatctcatgtttatgttgaaaattccattagagcaaaatatcacgacttgacaaat |
232 |
Q |
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|||||||||||| |||||||||| | |||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||| |
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| T |
10098379 |
ccaccatacaaagggtctagagtaa---aacatttattttagtagatctcatgtttatgttgaaaatttcattagagtaaaatatcacgatttgacaaat |
10098475 |
T |
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| Q |
233 |
ttgaggctattatctcgcatcatattcgattttatgcacaagaaatttccagccttaaagtga |
295 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10098476 |
ttgaggcttttctctcgcatcatattcgattttatgcacaagaaatttccaaccttaaagtga |
10098538 |
T |
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