View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4170_high_6 (Length: 280)
Name: NF4170_high_6
Description: NF4170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4170_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 4 - 265
Target Start/End: Complemental strand, 37233025 - 37232764
Alignment:
| Q |
4 |
aataattgattagtagtaagaataaggtggatttatcatggtaatattctttaaacgcaaacggggaaagatgctatatccttcgaaagaaactaaggaa |
103 |
Q |
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| T |
37233025 |
aataattgattagtagtaagaataaggtggatttatcatggtaatattctttaaacgcaaacggggaaagatgctatatccttcgaaagaaactaaggaa |
37232926 |
T |
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| Q |
104 |
cggatctttgatttcaaaactgcaaattagatatgatagcaatcaaccacataaaaagaaagggcagaattcatcatactcgggcggcatgtaaccaaat |
203 |
Q |
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| T |
37232925 |
cggatctttgatttcaaaactgcaaattagatatgatagcaatcaaccacataaaaagaaagggcagaattcatcatactcgggcggcatgtaaccaaat |
37232826 |
T |
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| Q |
204 |
gtgcctgccatgtgattagtgttatctgttgaatttgcgatattagtcagcttggttaatcc |
265 |
Q |
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| T |
37232825 |
gtgcctgccatgtgattagtgttatctgttgaatttgcgatattagtcagcttggttaatcc |
37232764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 37218189 - 37218095
Alignment:
| Q |
171 |
aattcatcatactcgggcggcatgtaaccaaatgtgcctgccatgtgattagtgttatctgttgaatttgcgatattagtcagcttggttaatcc |
265 |
Q |
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| T |
37218189 |
aattcatcatactcaggtggcatgtaaccaaatgtgcctgccacatgaacagtgttatctgctgaatttgcagcatcagtaagcttggttaatcc |
37218095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 37223903 - 37223809
Alignment:
| Q |
171 |
aattcatcatactcgggcggcatgtaaccaaatgtgcctgccatgtgattagtgttatctgttgaatttgcgatattagtcagcttggttaatcc |
265 |
Q |
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| T |
37223903 |
aattcatcatactcaggtggcatgtaaccaaatgtgcctgccacatgatcagtgttatctgctgaacttgcagcatcagtaagcttggttaatcc |
37223809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 37385086 - 37385160
Alignment:
| Q |
167 |
gcagaattcatcatactcgggcggcatgtaaccaaatgtgcctgccatgtgattagtgttatctgttgaatttgc |
241 |
Q |
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| T |
37385086 |
gcagaattcatcatactcaggtggcatgtaaccaaatgtgccagccacatgaagagtgttatctgttgaatttgc |
37385160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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