View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4170_low_12 (Length: 214)
Name: NF4170_low_12
Description: NF4170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4170_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 65; Significance: 9e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 23056409 - 23056345
Alignment:
| Q |
135 |
tatgaacataagagataagataactgaccctatgcctcgggttcccccagtcacaagagctgtct |
199 |
Q |
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| T |
23056409 |
tatgaacataagagataagataactgaccctatgcctcgggttcccccagtcacaagagctgtct |
23056345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 23056519 - 23056474
Alignment:
| Q |
17 |
tactaattcttccacaattgcatgccttgattgacaattgaaattg |
62 |
Q |
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| T |
23056519 |
tactaattcttccacaattgcatgccttgattcacaattgaaattg |
23056474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 23080267 - 23080225
Alignment:
| Q |
156 |
aactgaccctatgcctcgggttcccccagtcacaagagctgtc |
198 |
Q |
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|||||||||||||||||| ||||| |||||||| ||||||||| |
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| T |
23080267 |
aactgaccctatgcctcgtgttccaccagtcactagagctgtc |
23080225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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