View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4170_low_2 (Length: 417)
Name: NF4170_low_2
Description: NF4170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4170_low_2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 25 - 417
Target Start/End: Original strand, 34422316 - 34422708
Alignment:
| Q |
25 |
cttaattaggaattcgttcatatcggttgttatttaaaaattagtatattgctgtgtgatctttcgtggaagggattgattttgactcgcgataattggt |
124 |
Q |
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| T |
34422316 |
cttaattaggaattcgttcatatcggttgttatttaaaaattagtatattgctatgtgatctttcgtggaagggattgattttgactcgcgataattggt |
34422415 |
T |
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| Q |
125 |
tttgtccaggacttcagtttgagaattcttgtgaagttggagtcttctcaaaacttaccaatgcctattgtttggttgccattggaggttctgaaaattt |
224 |
Q |
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| T |
34422416 |
tttgtccaggacttcagtttgagaattcttgtgaagttggagtcttctcaaaacttaccaatgcctattgtttggttgccattggaggttctgaaaattt |
34422515 |
T |
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| Q |
225 |
ctacaggttttcattcactttagcttactgaaactatatttccgaatatatttccactgcaactatcttgatgaatgaattattgtgttgtttgatacag |
324 |
Q |
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| T |
34422516 |
ctacaggttttcattcactttagcttactgaaactatattttcgaatatatttccactgcaactatcttgatgaatgaattattgtgttgtttgatacag |
34422615 |
T |
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| Q |
325 |
tgcatttgaggctgagttatcagatgttatccctgtgatcaaaacttccattggtggtactcgtattgttggtcgcctttgtattggtaaatt |
417 |
Q |
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| T |
34422616 |
tgcatttgaggctgagttatcagatgttatccctgtgattaaaacttccattggtggtactcgtattgttggtcgcctttgtattggtaaatt |
34422708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 131 - 240
Target Start/End: Original strand, 34419054 - 34419163
Alignment:
| Q |
131 |
caggacttcagtttgagaattcttgtgaagttggagtcttctcaaaacttaccaatgcctattgtttggttgccattggaggttctgaaaatttctacag |
230 |
Q |
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| T |
34419054 |
cagggcttcaatatgagaattcttgtgaaattggagctttctcaaaacttaccaatgcgtattgtttgactgctattggaggttctgcaaatttctacag |
34419153 |
T |
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| Q |
231 |
gttttcattc |
240 |
Q |
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| T |
34419154 |
gttttcattc |
34419163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 415
Target Start/End: Original strand, 34419261 - 34419382
Alignment:
| Q |
294 |
gatgaatgaattattgtgttgtttgatacagtgcatttgaggctgagttatcagatgttatccctgtgatcaaaacttccattggtggtactcgtattgt |
393 |
Q |
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| T |
34419261 |
gatgaataaattaatttgttctttgatatagtgcatttgaggctgaactagcagatattatccctgtggtcaaaacatccattgctagcactcgccttgt |
34419360 |
T |
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| Q |
394 |
tggtcgcctttgtattggtaaa |
415 |
Q |
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| T |
34419361 |
tggtcttctttctgttggtaaa |
34419382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 24345770 - 24345889
Alignment:
| Q |
119 |
attggttttgtccaggacttcagtttgagaattcttgtgaagttggagtcttctcaaaacttaccaatgcctattgtttggttgccattggaggttctga |
218 |
Q |
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||||||||| | |||||||||||||||||||| |||||| ||||||| ||||| ||||||||||||| ||||||| |||||||||||||||| ||||| |
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| T |
24345770 |
attggttttctgcaggacttcagtttgagaataattgtgatattggagtgttctctaaacttaccaatggctattgtatggttgccattggaggctctga |
24345869 |
T |
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| Q |
219 |
aaatttctacaggttttcat |
238 |
Q |
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| T |
24345870 |
aagcttctacaggttttcat |
24345889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 6485179 - 6485117
Alignment:
| Q |
175 |
aaacttaccaatgcctattgtttggttgccattggaggttctgaaaatttctacaggttttca |
237 |
Q |
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| T |
6485179 |
aaactcaccaatgcctattgcttggttggcactggaggttccaataacttctacaggttttca |
6485117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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